PlantSME Plant secondary metabolism enzyme database

Andreaea rupestris (andreaea_rupestris)

Imported from atlas release summary for Andreaea rupestris.

684
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.49% Alkaloid pathway 22.95% Terpenoid pathway 22.37% Rosmarinic acid pathway 10.23% Flavonoid pathway 10.09% Steroid pathway 6.87%
Family Distribution
4CL 6.19% BAHD 5.56% C4H 5.38% C3'H/CYP98A 5.38% NMT 4.98% POD 4.7% CYP76 4.01% IFS 3.44%
Other Families 60.37%
More Families (96)
PAL 51 2.92% STR 45 2.58% DWF4/CYP90B1 43 2.46% T3O 42 2.41% IFR 41 2.35% GS 38 2.18% TRI/TRII 31 1.78% F3H 31 1.78% CAD 27 1.55% CYP71 27 1.55% COMT 26 1.49% UFGT 25 1.43% UGT 25 1.43% PYKS 24 1.37% BR6OX2/CYP85A2 23 1.32% T16H 22 1.26% 7DLGT 21 1.2% F3'H/CYP75B 21 1.2% SMT1/SMT2/SMT3 21 1.2% 16OMT 18 1.03% CODM/T6ODM 16 0.92% CYP90D1 16 0.92% CAS 16 0.92% SGD 15 0.86% H6H 15 0.86% CSE 14 0.8% RAS 14 0.8% F3'5'H/CYP75A 13 0.74% HCT 13 0.74% CNMT 12 0.69% COR 11 0.63% G8O/G8H 11 0.63% CPD/CYP90A1 11 0.63% SLS 10 0.57% LAMT 10 0.57% LAC 10 0.57% AACT 10 0.57% IO 9 0.52% DFR 9 0.52% GGPPS 9 0.52% CHS 8 0.46% PMT 7 0.4% 8HGO 7 0.4% ANR 7 0.4% FNS 7 0.4% CCR 7 0.4% CPR 7 0.4% DET2 7 0.4% CYP719 6 0.34% ISY 6 0.34% CYP80B1 6 0.34% DWF1 6 0.34% ROT3/CYP90C1 6 0.34% MVK 6 0.34% 7DLH 5 0.29% ADC 5 0.29% SQS/FDFT1 5 0.29% HYD1 5 0.29% TPS 5 0.29% MVD 5 0.29% CHI 4 0.23% F5H/CYP84A 4 0.23% SQE 4 0.23% BR6OX1/CYP85A1 4 0.23% HMGR 4 0.23% MPO 3 0.17% 6OMT_4OMT_SOMT 3 0.17% BBE 3 0.17% NCS 3 0.17% XMT_MXMT_DXMT 3 0.17% CCoAOMT 3 0.17% TAT 3 0.17% HPPR 3 0.17% SMO1/SMO2 3 0.17% FPPS 3 0.17% HDS/IspG 3 0.17% GES 2 0.11% ANS/LDOX 2 0.11% DWF5 2 0.11% DWF7 2 0.11% CYP51G1 2 0.11% DXR 2 0.11% PMK 2 0.11% HMGS 2 0.11% IDI 2 0.11% DXS 2 0.11% GPPS 2 0.11% CMK/IspE 2 0.11% TDC 1 0.06% TYDC_DDC 1 0.06% ODC 1 0.06% FK 1 0.06% CPI1 1 0.06% MCT/IspD 1 0.06% HDR/IspH 1 0.06% MDS/IspF 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 188 12 POD (75) View species results
Alkaloid pathway 157 20 NMT (28) View species results
Terpenoid pathway 153 20 BAHD (66) View species results
Rosmarinic acid pathway 70 7 C4H (21) View species results
Flavonoid pathway 69 8 UFGT (19) View species results
Steroid pathway 47 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 599 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 124 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
Reset
Gene Pathway Family Confidence Status
Arupctg000602_np121212120013980 Alkaloid SGD medium pass
Arupctg000651_np121212120023680 Alkaloid SGD low borderline
Arupctg000684_np121212120033760 Alkaloid SGD low borderline
Arupctg000817_np121212120062220 Alkaloid SGD medium pass
Arupctg000868_np121212120070350 Alkaloid SGD medium pass
Arupctg001005_np121212120099500 Alkaloid SGD medium pass
Arupctg001283_np121212120133430 Alkaloid SGD medium pass
Arupctg001355_np121212120150290 Alkaloid SGD medium pass
Arupctg001454_np121212120165170 Alkaloid SGD medium pass
Arupctg001454_np121212120165180 Alkaloid SGD medium pass
Arupctg001483_np121212120170380 Alkaloid SGD medium pass
Arupctg001593_np121212120187220 Alkaloid SGD low borderline
Arupctg001734_np121212120210880 Alkaloid SGD medium pass
Arupctg001827_np121212120227210 Alkaloid SGD medium pass
Arupctg001840_np121212120230330 Alkaloid SGD medium pass