Andreaea rupestris (andreaea_rupestris)
Imported from atlas release summary for Andreaea rupestris.
684
Family-Level Assignments
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
684
Family-Level Assignments
4CL
6.19%
BAHD
5.56%
C4H
5.38%
C3'H/CYP98A
5.38%
NMT
4.98%
POD
4.7%
CYP76
4.01%
IFS
3.44%
Other Families
60.37%
More Families (96)
PAL
51
2.92%
STR
45
2.58%
DWF4/CYP90B1
43
2.46%
T3O
42
2.41%
IFR
41
2.35%
GS
38
2.18%
TRI/TRII
31
1.78%
F3H
31
1.78%
CAD
27
1.55%
CYP71
27
1.55%
COMT
26
1.49%
UFGT
25
1.43%
UGT
25
1.43%
PYKS
24
1.37%
BR6OX2/CYP85A2
23
1.32%
T16H
22
1.26%
7DLGT
21
1.2%
F3'H/CYP75B
21
1.2%
SMT1/SMT2/SMT3
21
1.2%
16OMT
18
1.03%
CODM/T6ODM
16
0.92%
CYP90D1
16
0.92%
CAS
16
0.92%
SGD
15
0.86%
H6H
15
0.86%
CSE
14
0.8%
RAS
14
0.8%
F3'5'H/CYP75A
13
0.74%
HCT
13
0.74%
CNMT
12
0.69%
COR
11
0.63%
G8O/G8H
11
0.63%
CPD/CYP90A1
11
0.63%
SLS
10
0.57%
LAMT
10
0.57%
LAC
10
0.57%
AACT
10
0.57%
IO
9
0.52%
DFR
9
0.52%
GGPPS
9
0.52%
CHS
8
0.46%
PMT
7
0.4%
8HGO
7
0.4%
ANR
7
0.4%
FNS
7
0.4%
CCR
7
0.4%
CPR
7
0.4%
DET2
7
0.4%
CYP719
6
0.34%
ISY
6
0.34%
CYP80B1
6
0.34%
DWF1
6
0.34%
ROT3/CYP90C1
6
0.34%
MVK
6
0.34%
7DLH
5
0.29%
ADC
5
0.29%
SQS/FDFT1
5
0.29%
HYD1
5
0.29%
TPS
5
0.29%
MVD
5
0.29%
CHI
4
0.23%
F5H/CYP84A
4
0.23%
SQE
4
0.23%
BR6OX1/CYP85A1
4
0.23%
HMGR
4
0.23%
MPO
3
0.17%
6OMT_4OMT_SOMT
3
0.17%
BBE
3
0.17%
NCS
3
0.17%
XMT_MXMT_DXMT
3
0.17%
CCoAOMT
3
0.17%
TAT
3
0.17%
HPPR
3
0.17%
SMO1/SMO2
3
0.17%
FPPS
3
0.17%
HDS/IspG
3
0.17%
GES
2
0.11%
ANS/LDOX
2
0.11%
DWF5
2
0.11%
DWF7
2
0.11%
CYP51G1
2
0.11%
DXR
2
0.11%
PMK
2
0.11%
HMGS
2
0.11%
IDI
2
0.11%
DXS
2
0.11%
GPPS
2
0.11%
CMK/IspE
2
0.11%
TDC
1
0.06%
TYDC_DDC
1
0.06%
ODC
1
0.06%
FK
1
0.06%
CPI1
1
0.06%
MCT/IspD
1
0.06%
HDR/IspH
1
0.06%
MDS/IspF
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Family-Level Assignments | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 188 | 12 | POD (75) | View species results |
| Alkaloid pathway | 157 | 20 | NMT (28) | View species results |
| Terpenoid pathway | 153 | 20 | BAHD (66) | View species results |
| Rosmarinic acid pathway | 70 | 7 | C4H (21) | View species results |
| Flavonoid pathway | 69 | 8 | UFGT (19) | View species results |
| Steroid pathway | 47 | 13 | CAS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Family-level assignments | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 599 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 124 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Arupctg001143_np121212120117740 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Arupctg001144_np121212120117920 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Arupctg001168_np121212120119460 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg001178_np121212120122110 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg001298_np121212120137550 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Arupctg001306_np121212120140030 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg001307_np121212120143050 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg001443_np121212120162300 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg001519_np121212120176470 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg001539_np121212120180060 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Arupctg001612_np121212120188600 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Arupctg001641_np121212120196440 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Arupctg001677_np121212120206090 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg001693_np121212120208530 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg001799_np121212120218900 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Arupctg001824_np121212120224930 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg001828_np121212120227930 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Arupctg001829_np121212120228290 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg001829_np121212120229090 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Arupctg000944_np121212120090660 | Steroid | SQE | low | borderline |
| Arupctg001004_np121212120099020 | Steroid | SQE | low | borderline |
| Arupctg001820_np121212120223690 | Steroid | SQE | medium | pass |
| Arupctg001820_np121212120223830 | Steroid | SQE | medium | pass |
| Arupctg000817_np121212120062010 | Steroid | SQS/FDFT1 | medium | pass |
| Arupctg000889_np121212120078570 | Steroid | SQS/FDFT1 | high | pass |
| Arupctg001197_np121212120123490 | Steroid | SQS/FDFT1 | high | pass |
| Arupctg001825_np121212120225370 | Steroid | SQS/FDFT1 | low | borderline |
| Arupctg002020_np121212120246430 | Steroid | SQS/FDFT1 | high | pass |