PlantSME Plant secondary metabolism enzyme database

Aulacomnium palustre (aulacomnium_palustre)

Imported from atlas release summary for Aulacomnium palustre.

619
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.66% Terpenoid pathway 23.1% Alkaloid pathway 21.16% Flavonoid pathway 11.31% Rosmarinic acid pathway 11.15% Steroid pathway 6.62%
Family Distribution
BAHD 6.29% C4H 6.1% POD 5.48% 4CL 5.23% C3'H/CYP98A 5.23% NMT 4.85% CYP76 3.98% STR 2.8%
Other Families 60.05%
More Families (96)
IFS 45 2.8% BR6OX2/CYP85A2 40 2.49% PAL 39 2.43% F3H 38 2.36% GS 35 2.18% F3'H/CYP75B 35 2.18% T3O 32 1.99% IFR 32 1.99% PYKS 27 1.68% DWF4/CYP90B1 26 1.62% SMT1/SMT2/SMT3 25 1.56% CAD 24 1.49% CODM/T6ODM 23 1.43% UGT 21 1.31% CYP71 19 1.18% CHS 18 1.12% H6H 17 1.06% 7DLGT 17 1.06% T16H 17 1.06% IO 17 1.06% TRI/TRII 16 1.0% UFGT 16 1.0% COMT 15 0.93% CYP90D1 14 0.87% G8O/G8H 13 0.81% CAS 13 0.81% F3'5'H/CYP75A 12 0.75% HCT 12 0.75% SGD 11 0.68% SLS 11 0.68% RAS 11 0.68% CPD/CYP90A1 11 0.68% 8HGO 10 0.62% NCS 10 0.62% 7DLH 10 0.62% CSE 10 0.62% LAC 9 0.56% CPR 9 0.56% COR 8 0.5% LAMT 8 0.5% CNMT 8 0.5% FNS 8 0.5% DFR 8 0.5% ANR 8 0.5% SQS/FDFT1 8 0.5% CYP80B1 7 0.44% TAT 7 0.44% AACT 7 0.44% CCR 6 0.37% PMT 5 0.31% MPO 5 0.31% BBE 5 0.31% F5H/CYP84A 5 0.31% TDC 4 0.25% CYP719 4 0.25% 16OMT 4 0.25% CHI 4 0.25% DWF5 4 0.25% DET2 4 0.25% BR6OX1/CYP85A1 4 0.25% GGPPS 4 0.25% IDI 4 0.25% CCoAOMT 3 0.19% SQE 3 0.19% SMO1/SMO2 3 0.19% CYP51G1 3 0.19% HDS/IspG 3 0.19% TPS 3 0.19% DXR 3 0.19% HDR/IspH 3 0.19% FPPS 3 0.19% MVD 3 0.19% GES 2 0.12% ISY 2 0.12% ADC 2 0.12% TYDC_DDC 2 0.12% FLS 2 0.12% ANS/LDOX 2 0.12% HPPR 2 0.12% DWF1 2 0.12% ROT3/CYP90C1 2 0.12% MDS/IspF 2 0.12% HMGR 2 0.12% MVK 2 0.12% 6OMT_4OMT_SOMT 1 0.06% XMT_MXMT_DXMT 1 0.06% CYP80F1 1 0.06% CPI1 1 0.06% HYD1 1 0.06% FK 1 0.06% DWF7 1 0.06% MCT/IspD 1 0.06% PMK 1 0.06% DXS 1 0.06% HMGS 1 0.06% CMK/IspE 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 165 11 POD (85) View species results
Terpenoid pathway 143 19 BAHD (68) View species results
Alkaloid pathway 131 16 NMT (33) View species results
Flavonoid pathway 70 9 CHS (17) View species results
Rosmarinic acid pathway 69 7 C4H (26) View species results
Steroid pathway 41 14 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 574 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 124 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
Apal1241870042960 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Apal1242160043070 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Apal1254320048090 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Apal1254330048170 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Apal13090061300 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Apal13200062190 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Apal14640082780 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Apal14780084820 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Apal15480095090 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Apal16020103380 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Apal16420110010 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Apal1760127090 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Apal18040131400 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Apal2520150600 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Apal2610151850 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Apal5050178220 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Apal5620186730 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Apal6530199610 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Apal7320214660 Phenylpropanoid CAD low borderline CAD__00004__sp_B5LAT8_CAD1_CAPAN
Apal8490235860 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Apal8490235880 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
Apal8700242110 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Apal892080253730 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Apal9580276320 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ