Aulacomnium palustre (aulacomnium_palustre)
Imported from atlas release summary for Aulacomnium palustre.
619
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
619
Candidate Genes
BAHD
6.29%
C4H
6.1%
POD
5.48%
4CL
5.23%
C3'H/CYP98A
5.23%
NMT
4.85%
CYP76
3.98%
STR
2.8%
Other Families
60.05%
More Families (96)
IFS
45
2.8%
BR6OX2/CYP85A2
40
2.49%
PAL
39
2.43%
F3H
38
2.36%
GS
35
2.18%
F3'H/CYP75B
35
2.18%
T3O
32
1.99%
IFR
32
1.99%
PYKS
27
1.68%
DWF4/CYP90B1
26
1.62%
SMT1/SMT2/SMT3
25
1.56%
CAD
24
1.49%
CODM/T6ODM
23
1.43%
UGT
21
1.31%
CYP71
19
1.18%
CHS
18
1.12%
H6H
17
1.06%
7DLGT
17
1.06%
T16H
17
1.06%
IO
17
1.06%
TRI/TRII
16
1.0%
UFGT
16
1.0%
COMT
15
0.93%
CYP90D1
14
0.87%
G8O/G8H
13
0.81%
CAS
13
0.81%
F3'5'H/CYP75A
12
0.75%
HCT
12
0.75%
SGD
11
0.68%
SLS
11
0.68%
RAS
11
0.68%
CPD/CYP90A1
11
0.68%
8HGO
10
0.62%
NCS
10
0.62%
7DLH
10
0.62%
CSE
10
0.62%
LAC
9
0.56%
CPR
9
0.56%
COR
8
0.5%
LAMT
8
0.5%
CNMT
8
0.5%
FNS
8
0.5%
DFR
8
0.5%
ANR
8
0.5%
SQS/FDFT1
8
0.5%
CYP80B1
7
0.44%
TAT
7
0.44%
AACT
7
0.44%
CCR
6
0.37%
PMT
5
0.31%
MPO
5
0.31%
BBE
5
0.31%
F5H/CYP84A
5
0.31%
TDC
4
0.25%
CYP719
4
0.25%
16OMT
4
0.25%
CHI
4
0.25%
DWF5
4
0.25%
DET2
4
0.25%
BR6OX1/CYP85A1
4
0.25%
GGPPS
4
0.25%
IDI
4
0.25%
CCoAOMT
3
0.19%
SQE
3
0.19%
SMO1/SMO2
3
0.19%
CYP51G1
3
0.19%
HDS/IspG
3
0.19%
TPS
3
0.19%
DXR
3
0.19%
HDR/IspH
3
0.19%
FPPS
3
0.19%
MVD
3
0.19%
GES
2
0.12%
ISY
2
0.12%
ADC
2
0.12%
TYDC_DDC
2
0.12%
FLS
2
0.12%
ANS/LDOX
2
0.12%
HPPR
2
0.12%
DWF1
2
0.12%
ROT3/CYP90C1
2
0.12%
MDS/IspF
2
0.12%
HMGR
2
0.12%
MVK
2
0.12%
6OMT_4OMT_SOMT
1
0.06%
XMT_MXMT_DXMT
1
0.06%
CYP80F1
1
0.06%
CPI1
1
0.06%
HYD1
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
MCT/IspD
1
0.06%
PMK
1
0.06%
DXS
1
0.06%
HMGS
1
0.06%
CMK/IspE
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 165 | 11 | POD (85) | View species results |
| Terpenoid pathway | 143 | 19 | BAHD (68) | View species results |
| Alkaloid pathway | 131 | 16 | NMT (33) | View species results |
| Flavonoid pathway | 70 | 9 | CHS (17) | View species results |
| Rosmarinic acid pathway | 69 | 7 | C4H (26) | View species results |
| Steroid pathway | 41 | 14 | CAS (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 574 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 124 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Apal1226860035740 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH |
| Apal1241840042910 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal1242170043140 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal1258140049460 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00001__sp_H2E7T8_SMTL1_BOTBR |
| Apal1258160049540 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00001__sp_H2E7T8_SMTL1_BOTBR |
| Apal13840070190 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal14190074620 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH |
| Apal15070087550 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal16070103560 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal17300122790 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal2750153450 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal2930155030 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal4580172220 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal4670173900 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH |
| Apal589190190690 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00002__sp_H2E7T9_SMTL2_BOTBR |
| Apal6640202260 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal691750208230 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal7330215290 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal8100226210 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal8540237640 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH |
| Apal8620239550 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal898860260770 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00002__sp_H2E7T9_SMTL2_BOTBR |
| Apal898900260910 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| Apal9330273920 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT |
| Apal9830279140 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |