Aulacomnium palustre (aulacomnium_palustre)
Imported from atlas release summary for Aulacomnium palustre.
619
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
619
Candidate Genes
BAHD
6.29%
C4H
6.1%
POD
5.48%
4CL
5.23%
C3'H/CYP98A
5.23%
NMT
4.85%
CYP76
3.98%
STR
2.8%
Other Families
60.05%
More Families (96)
IFS
45
2.8%
BR6OX2/CYP85A2
40
2.49%
PAL
39
2.43%
F3H
38
2.36%
GS
35
2.18%
F3'H/CYP75B
35
2.18%
T3O
32
1.99%
IFR
32
1.99%
PYKS
27
1.68%
DWF4/CYP90B1
26
1.62%
SMT1/SMT2/SMT3
25
1.56%
CAD
24
1.49%
CODM/T6ODM
23
1.43%
UGT
21
1.31%
CYP71
19
1.18%
CHS
18
1.12%
H6H
17
1.06%
7DLGT
17
1.06%
T16H
17
1.06%
IO
17
1.06%
TRI/TRII
16
1.0%
UFGT
16
1.0%
COMT
15
0.93%
CYP90D1
14
0.87%
G8O/G8H
13
0.81%
CAS
13
0.81%
F3'5'H/CYP75A
12
0.75%
HCT
12
0.75%
SGD
11
0.68%
SLS
11
0.68%
RAS
11
0.68%
CPD/CYP90A1
11
0.68%
8HGO
10
0.62%
NCS
10
0.62%
7DLH
10
0.62%
CSE
10
0.62%
LAC
9
0.56%
CPR
9
0.56%
COR
8
0.5%
LAMT
8
0.5%
CNMT
8
0.5%
FNS
8
0.5%
DFR
8
0.5%
ANR
8
0.5%
SQS/FDFT1
8
0.5%
CYP80B1
7
0.44%
TAT
7
0.44%
AACT
7
0.44%
CCR
6
0.37%
PMT
5
0.31%
MPO
5
0.31%
BBE
5
0.31%
F5H/CYP84A
5
0.31%
TDC
4
0.25%
CYP719
4
0.25%
16OMT
4
0.25%
CHI
4
0.25%
DWF5
4
0.25%
DET2
4
0.25%
BR6OX1/CYP85A1
4
0.25%
GGPPS
4
0.25%
IDI
4
0.25%
CCoAOMT
3
0.19%
SQE
3
0.19%
SMO1/SMO2
3
0.19%
CYP51G1
3
0.19%
HDS/IspG
3
0.19%
TPS
3
0.19%
DXR
3
0.19%
HDR/IspH
3
0.19%
FPPS
3
0.19%
MVD
3
0.19%
GES
2
0.12%
ISY
2
0.12%
ADC
2
0.12%
TYDC_DDC
2
0.12%
FLS
2
0.12%
ANS/LDOX
2
0.12%
HPPR
2
0.12%
DWF1
2
0.12%
ROT3/CYP90C1
2
0.12%
MDS/IspF
2
0.12%
HMGR
2
0.12%
MVK
2
0.12%
6OMT_4OMT_SOMT
1
0.06%
XMT_MXMT_DXMT
1
0.06%
CYP80F1
1
0.06%
CPI1
1
0.06%
HYD1
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
MCT/IspD
1
0.06%
PMK
1
0.06%
DXS
1
0.06%
HMGS
1
0.06%
CMK/IspE
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 165 | 11 | POD (85) | View species results |
| Terpenoid pathway | 143 | 19 | BAHD (68) | View species results |
| Alkaloid pathway | 131 | 16 | NMT (33) | View species results |
| Flavonoid pathway | 70 | 9 | CHS (17) | View species results |
| Rosmarinic acid pathway | 69 | 7 | C4H (26) | View species results |
| Steroid pathway | 41 | 14 | CAS (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 574 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 124 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Apal11090013070 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1218060030530 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1218090030550 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal12360040690 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Apal12360040720 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Apal1237810041320 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1237850041440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1243830044040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1243860044100 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal12510046590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal12710056140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal13040060950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1370067860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1440077170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal14640082510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal15160089080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal15190089960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1520090170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal15400093920 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Apal16800116080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal16810116350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1720120560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1750125530 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal18200133410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal1960144900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal2780154020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal2790154060 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Apal3590161890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal3590161910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal4220167860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal4480170960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal5130179720 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal5440184060 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal5960192040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal6470198510 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Apal6680202910 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Apal6690202960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal7310214420 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal7310214430 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal7600218220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal8410232990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal893850255570 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Apal899940262850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal9070269310 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Apal910269480 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |