PlantSME Plant secondary metabolism enzyme database

Aulacomnium palustre (aulacomnium_palustre)

Imported from atlas release summary for Aulacomnium palustre.

619
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.66% Terpenoid pathway 23.1% Alkaloid pathway 21.16% Flavonoid pathway 11.31% Rosmarinic acid pathway 11.15% Steroid pathway 6.62%
Family Distribution
BAHD 6.29% C4H 6.1% POD 5.48% 4CL 5.23% C3'H/CYP98A 5.23% NMT 4.85% CYP76 3.98% STR 2.8%
Other Families 60.05%
More Families (96)
IFS 45 2.8% BR6OX2/CYP85A2 40 2.49% PAL 39 2.43% F3H 38 2.36% GS 35 2.18% F3'H/CYP75B 35 2.18% T3O 32 1.99% IFR 32 1.99% PYKS 27 1.68% DWF4/CYP90B1 26 1.62% SMT1/SMT2/SMT3 25 1.56% CAD 24 1.49% CODM/T6ODM 23 1.43% UGT 21 1.31% CYP71 19 1.18% CHS 18 1.12% H6H 17 1.06% 7DLGT 17 1.06% T16H 17 1.06% IO 17 1.06% TRI/TRII 16 1.0% UFGT 16 1.0% COMT 15 0.93% CYP90D1 14 0.87% G8O/G8H 13 0.81% CAS 13 0.81% F3'5'H/CYP75A 12 0.75% HCT 12 0.75% SGD 11 0.68% SLS 11 0.68% RAS 11 0.68% CPD/CYP90A1 11 0.68% 8HGO 10 0.62% NCS 10 0.62% 7DLH 10 0.62% CSE 10 0.62% LAC 9 0.56% CPR 9 0.56% COR 8 0.5% LAMT 8 0.5% CNMT 8 0.5% FNS 8 0.5% DFR 8 0.5% ANR 8 0.5% SQS/FDFT1 8 0.5% CYP80B1 7 0.44% TAT 7 0.44% AACT 7 0.44% CCR 6 0.37% PMT 5 0.31% MPO 5 0.31% BBE 5 0.31% F5H/CYP84A 5 0.31% TDC 4 0.25% CYP719 4 0.25% 16OMT 4 0.25% CHI 4 0.25% DWF5 4 0.25% DET2 4 0.25% BR6OX1/CYP85A1 4 0.25% GGPPS 4 0.25% IDI 4 0.25% CCoAOMT 3 0.19% SQE 3 0.19% SMO1/SMO2 3 0.19% CYP51G1 3 0.19% HDS/IspG 3 0.19% TPS 3 0.19% DXR 3 0.19% HDR/IspH 3 0.19% FPPS 3 0.19% MVD 3 0.19% GES 2 0.12% ISY 2 0.12% ADC 2 0.12% TYDC_DDC 2 0.12% FLS 2 0.12% ANS/LDOX 2 0.12% HPPR 2 0.12% DWF1 2 0.12% ROT3/CYP90C1 2 0.12% MDS/IspF 2 0.12% HMGR 2 0.12% MVK 2 0.12% 6OMT_4OMT_SOMT 1 0.06% XMT_MXMT_DXMT 1 0.06% CYP80F1 1 0.06% CPI1 1 0.06% HYD1 1 0.06% FK 1 0.06% DWF7 1 0.06% MCT/IspD 1 0.06% PMK 1 0.06% DXS 1 0.06% HMGS 1 0.06% CMK/IspE 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 165 11 POD (85) View species results
Terpenoid pathway 143 19 BAHD (68) View species results
Alkaloid pathway 131 16 NMT (33) View species results
Flavonoid pathway 70 9 CHS (17) View species results
Rosmarinic acid pathway 69 7 C4H (26) View species results
Steroid pathway 41 14 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 574 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 124 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
Apal10680008420 Alkaloid GS low borderline
Apal11730020800 Alkaloid GS medium pass
Apal11730020810 Alkaloid GS low borderline
Apal11730020930 Alkaloid GS low borderline
Apal1241870042960 Alkaloid GS low borderline
Apal1242160043070 Alkaloid GS low borderline
Apal1254320048090 Alkaloid GS low borderline
Apal1254330048170 Alkaloid GS low borderline
Apal13200062190 Alkaloid GS high pass
Apal14330076470 Alkaloid GS low borderline
Apal14570080960 Alkaloid GS low borderline
Apal14780084820 Alkaloid GS high pass
Apal15400093980 Alkaloid GS low borderline
Apal15480095090 Alkaloid GS low borderline
Apal16020103380 Alkaloid GS high pass
Apal1720120820 Alkaloid GS low borderline
Apal1760127090 Alkaloid GS low borderline
Apal18200133480 Alkaloid GS low borderline
Apal18270133940 Alkaloid GS low borderline
Apal18280134020 Alkaloid GS medium pass
Apal18600138600 Alkaloid GS medium pass
Apal18830140940 Alkaloid GS low borderline
Apal2350148740 Alkaloid GS low borderline
Apal2570151350 Alkaloid GS medium pass
Apal2980155630 Alkaloid GS low borderline
Apal4230167960 Alkaloid GS low borderline
Apal5050178220 Alkaloid GS high pass
Apal5620186730 Alkaloid GS low borderline
Apal7320214660 Alkaloid GS low borderline
Apal7720219290 Alkaloid GS low borderline
Apal7720219300 Alkaloid GS low borderline
Apal8490235860 Alkaloid GS high pass
Apal8490235880 Alkaloid GS high pass
Apal8700242110 Alkaloid GS medium pass
Apal9580276320 Alkaloid GS low borderline