Aulacomnium palustre (aulacomnium_palustre)
Imported from atlas release summary for Aulacomnium palustre.
902
Candidate Protein Records
619
Pathway-Level Records
1607
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1607
Family-Level Calls
BAHD
6.29%
C4H
6.1%
POD
5.48%
4CL
5.23%
C3'H/CYP98A
5.23%
NMT
4.85%
CYP76
3.98%
STR
2.8%
Other Families
60.05%
More Families (96)
IFS
45
2.8%
BR6OX2/CYP85A2
40
2.49%
PAL
39
2.43%
F3H
38
2.36%
GS
35
2.18%
F3'H/CYP75B
35
2.18%
T3O
32
1.99%
IFR
32
1.99%
PYKS
27
1.68%
DWF4/CYP90B1
26
1.62%
SMT1/SMT2/SMT3
25
1.56%
CAD
24
1.49%
CODM/T6ODM
23
1.43%
UGT
21
1.31%
CYP71
19
1.18%
CHS
18
1.12%
H6H
17
1.06%
7DLGT
17
1.06%
T16H
17
1.06%
IO
17
1.06%
TRI/TRII
16
1.0%
UFGT
16
1.0%
COMT
15
0.93%
CYP90D1
14
0.87%
G8O/G8H
13
0.81%
CAS
13
0.81%
F3'5'H/CYP75A
12
0.75%
HCT
12
0.75%
SGD
11
0.68%
SLS
11
0.68%
RAS
11
0.68%
CPD/CYP90A1
11
0.68%
8HGO
10
0.62%
NCS
10
0.62%
7DLH
10
0.62%
CSE
10
0.62%
LAC
9
0.56%
CPR
9
0.56%
COR
8
0.5%
LAMT
8
0.5%
CNMT
8
0.5%
FNS
8
0.5%
DFR
8
0.5%
ANR
8
0.5%
SQS/FDFT1
8
0.5%
CYP80B1
7
0.44%
TAT
7
0.44%
AACT
7
0.44%
CCR
6
0.37%
PMT
5
0.31%
MPO
5
0.31%
BBE
5
0.31%
F5H/CYP84A
5
0.31%
TDC
4
0.25%
CYP719
4
0.25%
16OMT
4
0.25%
CHI
4
0.25%
DWF5
4
0.25%
DET2
4
0.25%
BR6OX1/CYP85A1
4
0.25%
GGPPS
4
0.25%
IDI
4
0.25%
CCoAOMT
3
0.19%
SQE
3
0.19%
SMO1/SMO2
3
0.19%
CYP51G1
3
0.19%
HDS/IspG
3
0.19%
TPS
3
0.19%
DXR
3
0.19%
HDR/IspH
3
0.19%
FPPS
3
0.19%
MVD
3
0.19%
GES
2
0.12%
ISY
2
0.12%
ADC
2
0.12%
TYDC_DDC
2
0.12%
FLS
2
0.12%
ANS/LDOX
2
0.12%
HPPR
2
0.12%
DWF1
2
0.12%
ROT3/CYP90C1
2
0.12%
MDS/IspF
2
0.12%
HMGR
2
0.12%
MVK
2
0.12%
6OMT_4OMT_SOMT
1
0.06%
XMT_MXMT_DXMT
1
0.06%
CYP80F1
1
0.06%
CPI1
1
0.06%
HYD1
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
MCT/IspD
1
0.06%
PMK
1
0.06%
DXS
1
0.06%
HMGS
1
0.06%
CMK/IspE
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 165 | 11 | POD (85) | View species results |
| Terpenoid pathway | 143 | 19 | BAHD (68) | View species results |
| Alkaloid pathway | 131 | 16 | NMT (33) | View species results |
| Flavonoid pathway | 70 | 9 | CHS (17) | View species results |
| Rosmarinic acid pathway | 69 | 7 | C4H (26) | View species results |
| Steroid pathway | 41 | 14 | CAS (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 574 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 124 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Apal8260229410 | Alkaloid | T16H | medium | borderline |
| Apal875710244280 | Alkaloid | T16H | low | borderline |
| Apal898920261030 | Alkaloid | T16H | medium | borderline |
| Apal11210014050 | Alkaloid | T3O | medium | pass |
| Apal1261460050900 | Alkaloid | T3O | medium | borderline |
| Apal1261470050920 | Alkaloid | T3O | medium | borderline |
| Apal13150061660 | Alkaloid | T3O | medium | borderline |
| Apal14720084310 | Alkaloid | T3O | medium | borderline |
| Apal1570098200 | Alkaloid | T3O | medium | borderline |
| Apal1580100240 | Alkaloid | T3O | medium | pass |
| Apal16170105160 | Alkaloid | T3O | medium | borderline |
| Apal16180105450 | Alkaloid | T3O | medium | borderline |
| Apal17430124500 | Alkaloid | T3O | medium | borderline |
| Apal18400136130 | Alkaloid | T3O | medium | borderline |
| Apal1950144630 | Alkaloid | T3O | low | borderline |
| Apal3170157860 | Alkaloid | T3O | medium | borderline |
| Apal4840176530 | Alkaloid | T3O | medium | pass |
| Apal4850176650 | Alkaloid | T3O | medium | borderline |
| Apal5570185810 | Alkaloid | T3O | medium | pass |
| Apal5770188840 | Alkaloid | T3O | medium | borderline |
| Apal6900207890 | Alkaloid | T3O | medium | borderline |
| Apal7010209800 | Alkaloid | T3O | medium | borderline |
| Apal7360215600 | Alkaloid | T3O | medium | pass |
| Apal7470217140 | Alkaloid | T3O | medium | pass |
| Apal7470217150 | Alkaloid | T3O | low | borderline |
| Apal7500217510 | Alkaloid | T3O | medium | pass |
| Apal7520217700 | Alkaloid | T3O | low | borderline |
| Apal7520217750 | Alkaloid | T3O | low | borderline |
| Apal7710219210 | Alkaloid | T3O | medium | pass |
| Apal8280230000 | Alkaloid | T3O | medium | pass |
| Apal8660241110 | Alkaloid | T3O | high | pass |
| Apal881170246390 | Alkaloid | T3O | medium | borderline |
| Apal888900251100 | Alkaloid | T3O | medium | borderline |
| Apal892690254440 | Alkaloid | T3O | medium | borderline |
| Apal9350274250 | Alkaloid | T3O | medium | pass |
| Apal12260035020 | Alkaloid | TDC | low | borderline |
| Apal12260035070 | Alkaloid | TDC | low | borderline |
| Apal2240147440 | Alkaloid | TDC | low | borderline |
| Apal896120257550 | Alkaloid | TDC | low | borderline |
| Apal1197310024930 | Alkaloid | TRI/TRII | medium | pass |
| Apal12640052810 | Alkaloid | TRI/TRII | low | borderline |
| Apal1460081470 | Alkaloid | TRI/TRII | medium | pass |
| Apal1460081540 | Alkaloid | TRI/TRII | medium | pass |
| Apal1650110990 | Alkaloid | TRI/TRII | medium | pass |
| Apal16730115230 | Alkaloid | TRI/TRII | medium | pass |
| Apal2520150590 | Alkaloid | TRI/TRII | medium | pass |
| Apal2690152840 | Alkaloid | TRI/TRII | medium | pass |
| Apal2790154140 | Alkaloid | TRI/TRII | low | borderline |
| Apal4420170500 | Alkaloid | TRI/TRII | medium | pass |
| Apal5920191160 | Alkaloid | TRI/TRII | low | borderline |