PlantSME Plant secondary metabolism enzyme database

Begonia fuchsioides (begonia_fuchsioides)

Imported from atlas release summary for Begonia fuchsioides.

1556
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.34% Phenylpropanoid pathway 22.24% Alkaloid pathway 19.41% Flavonoid pathway 12.72% Rosmarinic acid pathway 10.09% Steroid pathway 7.2%
Family Distribution
BAHD 6.24% C4H 6.11% C3'H/CYP98A 5.54% 4CL 4.87% POD 4.42% IFS 3.69% CYP76 3.69% T3O 3.39%
Other Families 62.05%
More Families (94)
UGT 109 2.72% 7DLGT 104 2.59% UFGT 104 2.59% F3H 102 2.54% NMT 98 2.45% STR 87 2.17% DWF4/CYP90B1 85 2.12% F3'H/CYP75B 73 1.82% BR6OX2/CYP85A2 69 1.72% CAD 67 1.67% IFR 61 1.52% SMT1/SMT2/SMT3 61 1.52% CODM/T6ODM 57 1.42% CYP71 50 1.25% PYKS 49 1.22% CSE 49 1.22% CAS 49 1.22% H6H 47 1.17% TRI/TRII 44 1.1% CYP90D1 41 1.02% HCT 40 1.0% TPS 38 0.95% ANR 37 0.92% LAC 37 0.92% RAS 37 0.92% GES 36 0.9% T16H 33 0.82% TAT 32 0.8% PMT 31 0.77% G8O/G8H 30 0.75% GS 30 0.75% PAL 30 0.75% F5H/CYP84A 30 0.75% IO 26 0.65% F3'5'H/CYP75A 26 0.65% NCS 25 0.62% CCR 25 0.62% COMT 24 0.6% CPD/CYP90A1 24 0.6% SLS 22 0.55% FNS 22 0.55% BBE 20 0.5% CYP51G1 20 0.5% ROT3/CYP90C1 17 0.42% BR6OX1/CYP85A1 17 0.42% 7DLH 16 0.4% 16OMT 15 0.37% SGD 15 0.37% CHS 15 0.37% MPO 14 0.35% 8HGO 13 0.32% CPR 13 0.32% SQE 13 0.32% CNMT 12 0.3% CYP719 12 0.3% DFR 12 0.3% CCoAOMT 12 0.3% AACT 12 0.3% FPPS 12 0.3% LAMT 10 0.25% ANS/LDOX 10 0.25% SQS/FDFT1 10 0.25% SMO1/SMO2 10 0.25% CYP80B1 9 0.22% COR 9 0.22% GGPPS 9 0.22% DET2 8 0.2% HMGR 8 0.2% MVD 8 0.2% DWF7 7 0.17% MVK 7 0.17% ISY 6 0.15% TDC 6 0.15% CHI 6 0.15% TYDC_DDC 5 0.12% HPPR 5 0.12% HYD1 5 0.12% DXS 5 0.12% ADC 4 0.1% DWF1 4 0.1% XMT_MXMT_DXMT 3 0.07% MDS/IspF 3 0.07% IDI 3 0.07% HMGS 3 0.07% DXR 3 0.07% HDR/IspH 3 0.07% PMK 3 0.07% FLS 2 0.05% DWF5 2 0.05% FK 2 0.05% CPI1 2 0.05% CMK/IspE 2 0.05% MCT/IspD 2 0.05% HDS/IspG 2 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 441 19 BAHD (193) View species results
Phenylpropanoid pathway 346 12 POD (150) View species results
Alkaloid pathway 302 22 NMT (47) View species results
Flavonoid pathway 198 11 UFGT (96) View species results
Rosmarinic acid pathway 157 7 C4H (51) View species results
Steroid pathway 112 12 SMT1/SMT2/SMT3 (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1499 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 327 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
Bfucscaffold1175_cov1930033130 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO
Bfucscaffold16525_cov730105740 Alkaloid COR low borderline COR__00004__sp_Q9SQ69_COR12_PAPSO
Bfucscaffold2169_cov1470164830 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Bfucscaffold2529_cov1470204330 Alkaloid COR low borderline COR__00004__sp_Q9SQ69_COR12_PAPSO
Bfucscaffold657_cov1180409330 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
Bfucscaffold7547_cov1460429750 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
Bfucscaffold7547_cov1460429760 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Bfucscaffold91282_cov1350474350 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Bfucscaffold91439_cov1270486180 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO