Begonia fuchsioides (begonia_fuchsioides)
Imported from atlas release summary for Begonia fuchsioides.
1556
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1556
Candidate Genes
BAHD
6.24%
C4H
6.11%
C3'H/CYP98A
5.54%
4CL
4.87%
POD
4.42%
IFS
3.69%
CYP76
3.69%
T3O
3.39%
Other Families
62.05%
More Families (94)
UGT
109
2.72%
7DLGT
104
2.59%
UFGT
104
2.59%
F3H
102
2.54%
NMT
98
2.45%
STR
87
2.17%
DWF4/CYP90B1
85
2.12%
F3'H/CYP75B
73
1.82%
BR6OX2/CYP85A2
69
1.72%
CAD
67
1.67%
IFR
61
1.52%
SMT1/SMT2/SMT3
61
1.52%
CODM/T6ODM
57
1.42%
CYP71
50
1.25%
PYKS
49
1.22%
CSE
49
1.22%
CAS
49
1.22%
H6H
47
1.17%
TRI/TRII
44
1.1%
CYP90D1
41
1.02%
HCT
40
1.0%
TPS
38
0.95%
ANR
37
0.92%
LAC
37
0.92%
RAS
37
0.92%
GES
36
0.9%
T16H
33
0.82%
TAT
32
0.8%
PMT
31
0.77%
G8O/G8H
30
0.75%
GS
30
0.75%
PAL
30
0.75%
F5H/CYP84A
30
0.75%
IO
26
0.65%
F3'5'H/CYP75A
26
0.65%
NCS
25
0.62%
CCR
25
0.62%
COMT
24
0.6%
CPD/CYP90A1
24
0.6%
SLS
22
0.55%
FNS
22
0.55%
BBE
20
0.5%
CYP51G1
20
0.5%
ROT3/CYP90C1
17
0.42%
BR6OX1/CYP85A1
17
0.42%
7DLH
16
0.4%
16OMT
15
0.37%
SGD
15
0.37%
CHS
15
0.37%
MPO
14
0.35%
8HGO
13
0.32%
CPR
13
0.32%
SQE
13
0.32%
CNMT
12
0.3%
CYP719
12
0.3%
DFR
12
0.3%
CCoAOMT
12
0.3%
AACT
12
0.3%
FPPS
12
0.3%
LAMT
10
0.25%
ANS/LDOX
10
0.25%
SQS/FDFT1
10
0.25%
SMO1/SMO2
10
0.25%
CYP80B1
9
0.22%
COR
9
0.22%
GGPPS
9
0.22%
DET2
8
0.2%
HMGR
8
0.2%
MVD
8
0.2%
DWF7
7
0.17%
MVK
7
0.17%
ISY
6
0.15%
TDC
6
0.15%
CHI
6
0.15%
TYDC_DDC
5
0.12%
HPPR
5
0.12%
HYD1
5
0.12%
DXS
5
0.12%
ADC
4
0.1%
DWF1
4
0.1%
XMT_MXMT_DXMT
3
0.07%
MDS/IspF
3
0.07%
IDI
3
0.07%
HMGS
3
0.07%
DXR
3
0.07%
HDR/IspH
3
0.07%
PMK
3
0.07%
FLS
2
0.05%
DWF5
2
0.05%
FK
2
0.05%
CPI1
2
0.05%
CMK/IspE
2
0.05%
MCT/IspD
2
0.05%
HDS/IspG
2
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 441 | 19 | BAHD (193) | View species results |
| Phenylpropanoid pathway | 346 | 12 | POD (150) | View species results |
| Alkaloid pathway | 302 | 22 | NMT (47) | View species results |
| Flavonoid pathway | 198 | 11 | UFGT (96) | View species results |
| Rosmarinic acid pathway | 157 | 7 | C4H (51) | View species results |
| Steroid pathway | 112 | 12 | SMT1/SMT2/SMT3 (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1499 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 327 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bfucscaffold1047_cov1390005920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1113_cov1510018590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold11377_cov1520025350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1165_cov1560029700 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1165_cov1560032120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1322_cov1060050790 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bfucscaffold13278_cov1500051210 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1332_cov1270052680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1341_cov1500054110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1387_cov1620061230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold13910_cov1670062810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1396_cov1540064000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1494_cov1550078750 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1501_cov1860082470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1510_cov1530086990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1561_cov1350091720 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bfucscaffold1592_cov1510100410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1606_cov1450102270 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1624_cov1920102910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold184_cov1110134310 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1871_cov1610135520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold1905_cov1570138620 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold191_cov1110139130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold20_cov1550159770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold2183_cov1810166930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold2344_cov1020185980 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bfucscaffold235_cov1360188860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold235_cov1360188880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold2482_cov1830196550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold2637_cov1340215640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold2664_cov1160216680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold2716_cov1500219540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold283_cov1320227220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold2868_cov1890230690 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold2926_cov1400237000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold2926_cov1400237110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold2929_cov1000237580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold3020_cov1480246170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold3072_cov1250249470 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bfucscaffold3207_cov1260260900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold32274_cov1390263450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold3240_cov1200266480 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bfucscaffold3390_cov1610275710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold3413_cov1700276790 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold367_cov1270286430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold3799_cov1270292590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold380_cov1310293500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold381_cov1640298860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold381_cov1640298950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold383_cov1460300110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |