Begonia fuchsioides (begonia_fuchsioides)
Imported from atlas release summary for Begonia fuchsioides.
1556
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1556
Candidate Genes
BAHD
6.24%
C4H
6.11%
C3'H/CYP98A
5.54%
4CL
4.87%
POD
4.42%
IFS
3.69%
CYP76
3.69%
T3O
3.39%
Other Families
62.05%
More Families (94)
UGT
109
2.72%
7DLGT
104
2.59%
UFGT
104
2.59%
F3H
102
2.54%
NMT
98
2.45%
STR
87
2.17%
DWF4/CYP90B1
85
2.12%
F3'H/CYP75B
73
1.82%
BR6OX2/CYP85A2
69
1.72%
CAD
67
1.67%
IFR
61
1.52%
SMT1/SMT2/SMT3
61
1.52%
CODM/T6ODM
57
1.42%
CYP71
50
1.25%
PYKS
49
1.22%
CSE
49
1.22%
CAS
49
1.22%
H6H
47
1.17%
TRI/TRII
44
1.1%
CYP90D1
41
1.02%
HCT
40
1.0%
TPS
38
0.95%
ANR
37
0.92%
LAC
37
0.92%
RAS
37
0.92%
GES
36
0.9%
T16H
33
0.82%
TAT
32
0.8%
PMT
31
0.77%
G8O/G8H
30
0.75%
GS
30
0.75%
PAL
30
0.75%
F5H/CYP84A
30
0.75%
IO
26
0.65%
F3'5'H/CYP75A
26
0.65%
NCS
25
0.62%
CCR
25
0.62%
COMT
24
0.6%
CPD/CYP90A1
24
0.6%
SLS
22
0.55%
FNS
22
0.55%
BBE
20
0.5%
CYP51G1
20
0.5%
ROT3/CYP90C1
17
0.42%
BR6OX1/CYP85A1
17
0.42%
7DLH
16
0.4%
16OMT
15
0.37%
SGD
15
0.37%
CHS
15
0.37%
MPO
14
0.35%
8HGO
13
0.32%
CPR
13
0.32%
SQE
13
0.32%
CNMT
12
0.3%
CYP719
12
0.3%
DFR
12
0.3%
CCoAOMT
12
0.3%
AACT
12
0.3%
FPPS
12
0.3%
LAMT
10
0.25%
ANS/LDOX
10
0.25%
SQS/FDFT1
10
0.25%
SMO1/SMO2
10
0.25%
CYP80B1
9
0.22%
COR
9
0.22%
GGPPS
9
0.22%
DET2
8
0.2%
HMGR
8
0.2%
MVD
8
0.2%
DWF7
7
0.17%
MVK
7
0.17%
ISY
6
0.15%
TDC
6
0.15%
CHI
6
0.15%
TYDC_DDC
5
0.12%
HPPR
5
0.12%
HYD1
5
0.12%
DXS
5
0.12%
ADC
4
0.1%
DWF1
4
0.1%
XMT_MXMT_DXMT
3
0.07%
MDS/IspF
3
0.07%
IDI
3
0.07%
HMGS
3
0.07%
DXR
3
0.07%
HDR/IspH
3
0.07%
PMK
3
0.07%
FLS
2
0.05%
DWF5
2
0.05%
FK
2
0.05%
CPI1
2
0.05%
CMK/IspE
2
0.05%
MCT/IspD
2
0.05%
HDS/IspG
2
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 441 | 19 | BAHD (193) | View species results |
| Phenylpropanoid pathway | 346 | 12 | POD (150) | View species results |
| Alkaloid pathway | 302 | 22 | NMT (47) | View species results |
| Flavonoid pathway | 198 | 11 | UFGT (96) | View species results |
| Rosmarinic acid pathway | 157 | 7 | C4H (51) | View species results |
| Steroid pathway | 112 | 12 | SMT1/SMT2/SMT3 (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1499 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 327 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bfucscaffold383_cov1460300890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold40355_cov1790310880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold4057_cov1490312140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold4292_cov1370322370 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold4295_cov1540324150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold4464_cov1840333770 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold4611_cov1020344520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold46617_cov1680345570 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold4691_cov1350346510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold4761_cov1340350380 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bfucscaffold4878_cov1680353790 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold4949_cov1060356440 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bfucscaffold5351_cov1620370580 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold5419_cov1440374130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold6014_cov1240389560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold6026_cov1430390830 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bfucscaffold6327_cov1540401440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold651_cov1460408870 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bfucscaffold744_cov1600425090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold744_cov1600425290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold745_cov1790426830 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold761_cov1210431840 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bfucscaffold798_cov1340438290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold802_cov1480440700 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold822_cov1420447180 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold848_cov1430453850 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold91256_cov1220471880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold91309_cov1630476820 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold913_cov1220483580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold91414_cov1660483810 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Bfucscaffold91586_cov1210490720 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold91864_cov1580498380 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold91936_cov1400503450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold9255_cov2240504220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold95_cov1240510470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold96_cov1160511550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bfucscaffold988_cov1640513590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |