Begonia fuchsioides (begonia_fuchsioides)
Imported from atlas release summary for Begonia fuchsioides.
2030
Candidate Protein Records
1556
Pathway-Level Records
4008
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4008
Family-Level Calls
BAHD
6.24%
C4H
6.11%
C3'H/CYP98A
5.54%
4CL
4.87%
POD
4.42%
IFS
3.69%
CYP76
3.69%
T3O
3.39%
Other Families
62.05%
More Families (94)
UGT
109
2.72%
7DLGT
104
2.59%
UFGT
104
2.59%
F3H
102
2.54%
NMT
98
2.45%
STR
87
2.17%
DWF4/CYP90B1
85
2.12%
F3'H/CYP75B
73
1.82%
BR6OX2/CYP85A2
69
1.72%
CAD
67
1.67%
IFR
61
1.52%
SMT1/SMT2/SMT3
61
1.52%
CODM/T6ODM
57
1.42%
CYP71
50
1.25%
PYKS
49
1.22%
CSE
49
1.22%
CAS
49
1.22%
H6H
47
1.17%
TRI/TRII
44
1.1%
CYP90D1
41
1.02%
HCT
40
1.0%
TPS
38
0.95%
ANR
37
0.92%
LAC
37
0.92%
RAS
37
0.92%
GES
36
0.9%
T16H
33
0.82%
TAT
32
0.8%
PMT
31
0.77%
G8O/G8H
30
0.75%
GS
30
0.75%
PAL
30
0.75%
F5H/CYP84A
30
0.75%
IO
26
0.65%
F3'5'H/CYP75A
26
0.65%
NCS
25
0.62%
CCR
25
0.62%
COMT
24
0.6%
CPD/CYP90A1
24
0.6%
SLS
22
0.55%
FNS
22
0.55%
BBE
20
0.5%
CYP51G1
20
0.5%
ROT3/CYP90C1
17
0.42%
BR6OX1/CYP85A1
17
0.42%
7DLH
16
0.4%
16OMT
15
0.37%
SGD
15
0.37%
CHS
15
0.37%
MPO
14
0.35%
8HGO
13
0.32%
CPR
13
0.32%
SQE
13
0.32%
CNMT
12
0.3%
CYP719
12
0.3%
DFR
12
0.3%
CCoAOMT
12
0.3%
AACT
12
0.3%
FPPS
12
0.3%
LAMT
10
0.25%
ANS/LDOX
10
0.25%
SQS/FDFT1
10
0.25%
SMO1/SMO2
10
0.25%
CYP80B1
9
0.22%
COR
9
0.22%
GGPPS
9
0.22%
DET2
8
0.2%
HMGR
8
0.2%
MVD
8
0.2%
DWF7
7
0.17%
MVK
7
0.17%
ISY
6
0.15%
TDC
6
0.15%
CHI
6
0.15%
TYDC_DDC
5
0.12%
HPPR
5
0.12%
HYD1
5
0.12%
DXS
5
0.12%
ADC
4
0.1%
DWF1
4
0.1%
XMT_MXMT_DXMT
3
0.07%
MDS/IspF
3
0.07%
IDI
3
0.07%
HMGS
3
0.07%
DXR
3
0.07%
HDR/IspH
3
0.07%
PMK
3
0.07%
FLS
2
0.05%
DWF5
2
0.05%
FK
2
0.05%
CPI1
2
0.05%
CMK/IspE
2
0.05%
MCT/IspD
2
0.05%
HDS/IspG
2
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 441 | 19 | BAHD (193) | View species results |
| Phenylpropanoid pathway | 346 | 12 | POD (150) | View species results |
| Alkaloid pathway | 302 | 22 | NMT (47) | View species results |
| Flavonoid pathway | 198 | 11 | UFGT (96) | View species results |
| Rosmarinic acid pathway | 157 | 7 | C4H (51) | View species results |
| Steroid pathway | 112 | 12 | SMT1/SMT2/SMT3 (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1499 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 327 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bfucscaffold449_cov1580340200 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Bfucscaffold4514_cov1160341780 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Bfucscaffold4872_cov1280353460 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bfucscaffold4992_cov1270357570 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Bfucscaffold5351_cov1620370680 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Bfucscaffold5635_cov1250381170 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Bfucscaffold6026_cov1430390230 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Bfucscaffold7344_cov1460422990 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bfucscaffold744_cov1600426470 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Bfucscaffold761_cov1210431880 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bfucscaffold781_cov1310434680 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bfucscaffold822_cov1420447170 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Bfucscaffold91315_cov1480477190 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bfucscaffold91396_cov1220483260 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bfucscaffold91817_cov1480491980 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Bfucscaffold91842_cov2040494350 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Bfucscaffold1700_cov1560117960 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Bfucscaffold2529_cov1470204490 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Bfucscaffold347_cov1400280110 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Bfucscaffold511_cov1190363740 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Bfucscaffold781_cov1310434590 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Bfucscaffold91224_cov1640469520 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00006__sp_A4GE70_DXMT1_COFCA |
| Bfucscaffold91439_cov1270486330 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00003__sp_A0A0S2PMA8_TCS1D_CAMTA |
| Bfucscaffold9498_cov2000508640 | Alkaloid | XMT_MXMT_DXMT | medium | pass | XMT_MXMT_DXMT__00003__sp_A0A0S2PMA8_TCS1D_CAMTA |
| Bfucscaffold1104_cov1430016730 | Flavonoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Bfucscaffold1104_cov1430016740 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Bfucscaffold1111_cov1190017770 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Bfucscaffold13748_cov1440058110 | Flavonoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Bfucscaffold1386_cov1670060630 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Bfucscaffold1496_cov1430080610 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Bfucscaffold1567_cov1770094310 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Bfucscaffold1568_cov1640095890 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Bfucscaffold1592_cov1510100050 | Flavonoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Bfucscaffold1692_cov1340112860 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Bfucscaffold169_cov1370115940 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Bfucscaffold17256_cov1150120720 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Bfucscaffold1756_cov1120122350 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Bfucscaffold1779_cov1370124190 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Bfucscaffold20089_cov1920149040 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Bfucscaffold20089_cov1920149300 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Bfucscaffold2009_cov1360151010 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Bfucscaffold2064_cov1230155360 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Bfucscaffold206_cov1450156860 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Bfucscaffold2204_cov1440170710 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Bfucscaffold2258_cov1580173500 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Bfucscaffold2271_cov1850176940 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Bfucscaffold2335_cov1330183630 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Bfucscaffold23543_cov1290188590 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Bfucscaffold2380_cov1950189980 | Flavonoid | 4CL | low | borderline | 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ |
| Bfucscaffold2529_cov1470201880 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |