Begonia fuchsioides (begonia_fuchsioides)

This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Download candidate protein FASTA for this species

Pathway Coverage

6 Pathways

Terpenoid pathway 28.34% Phenylpropanoid pathway 22.24% Alkaloid pathway 19.41% Flavonoid pathway 12.72% Rosmarinic acid pathway 10.09% Steroid pathway 7.2%

Family Distribution

4008 Family-Level Calls

BAHD 6.24% C4H 6.11% C3'H/CYP98A 5.54% 4CL 4.87% POD 4.42% IFS 3.69% CYP76 3.69% T3O 3.39%

Other Families 62.05%

More Families (94)

UGT 109 2.72% 7DLGT 104 2.59% UFGT 104 2.59% F3H 102 2.54% NMT 98 2.45% STR 87 2.17% DWF4/CYP90B1 85 2.12% F3'H/CYP75B 73 1.82% BR6OX2/CYP85A2 69 1.72% CAD 67 1.67% IFR 61 1.52% SMT1/SMT2/SMT3 61 1.52% CODM/T6ODM 57 1.42% CYP71 50 1.25% PYKS 49 1.22% CSE 49 1.22% CAS 49 1.22% H6H 47 1.17% TRI/TRII 44 1.1% CYP90D1 41 1.02% HCT 40 1.0% TPS 38 0.95% ANR 37 0.92% LAC 37 0.92% RAS 37 0.92% GES 36 0.9% T16H 33 0.82% TAT 32 0.8% PMT 31 0.77% G8O/G8H 30 0.75% GS 30 0.75% PAL 30 0.75% F5H/CYP84A 30 0.75% IO 26 0.65% F3'5'H/CYP75A 26 0.65% NCS 25 0.62% CCR 25 0.62% COMT 24 0.6% CPD/CYP90A1 24 0.6% SLS 22 0.55% FNS 22 0.55% BBE 20 0.5% CYP51G1 20 0.5% ROT3/CYP90C1 17 0.42% BR6OX1/CYP85A1 17 0.42% 7DLH 16 0.4% 16OMT 15 0.37% SGD 15 0.37% CHS 15 0.37% MPO 14 0.35% 8HGO 13 0.32% CPR 13 0.32% SQE 13 0.32% CNMT 12 0.3% CYP719 12 0.3% DFR 12 0.3% CCoAOMT 12 0.3% AACT 12 0.3% FPPS 12 0.3% LAMT 10 0.25% ANS/LDOX 10 0.25% SQS/FDFT1 10 0.25% SMO1/SMO2 10 0.25% CYP80B1 9 0.22% COR 9 0.22% GGPPS 9 0.22% DET2 8 0.2% HMGR 8 0.2% MVD 8 0.2% DWF7 7 0.17% MVK 7 0.17% ISY 6 0.15% TDC 6 0.15% CHI 6 0.15% TYDC_DDC 5 0.12% HPPR 5 0.12% HYD1 5 0.12% DXS 5 0.12% ADC 4 0.1% DWF1 4 0.1% XMT_MXMT_DXMT 3 0.07% MDS/IspF 3 0.07% IDI 3 0.07% HMGS 3 0.07% DXR 3 0.07% HDR/IspH 3 0.07% PMK 3 0.07% FLS 2 0.05% DWF5 2 0.05% FK 2 0.05% CPI1 2 0.05% CMK/IspE 2 0.05% MCT/IspD 2 0.05% HDS/IspG 2 0.05%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Pathway-Level Records	Detected Families	Top family	Results
Terpenoid pathway	441	19	BAHD (193)	View species results
Phenylpropanoid pathway	346	12	POD (150)	View species results
Alkaloid pathway	302	22	NMT (47)	View species results
Flavonoid pathway	198	11	UFGT (96)	View species results
Rosmarinic acid pathway	157	7	C4H (51)	View species results
Steroid pathway	112	12	SMT1/SMT2/SMT3 (35)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Detected families	Assignment calls	Included families
P450/oxygenase	23	1499	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	327	BAHD, HCT, RAS

Identification Result List

Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.

Current pathway filter: Alkaloid pathway

Protein/Isoform Record	Pathway	Family	Confidence	Status	Best Target
Bfucscaffold449_cov1580340200	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Bfucscaffold4514_cov1160341780	Alkaloid	TRI/TRII	low	borderline	TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Bfucscaffold4872_cov1280353460	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Bfucscaffold4992_cov1270357570	Alkaloid	TRI/TRII	low	borderline	TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Bfucscaffold5351_cov1620370680	Alkaloid	TRI/TRII	low	borderline	TRI_TRII__00005__sp_P50162_TRN1_DATST
Bfucscaffold5635_cov1250381170	Alkaloid	TRI/TRII	low	borderline	TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Bfucscaffold6026_cov1430390230	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Bfucscaffold7344_cov1460422990	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Bfucscaffold744_cov1600426470	Alkaloid	TRI/TRII	low	borderline	TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Bfucscaffold761_cov1210431880	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Bfucscaffold781_cov1310434680	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Bfucscaffold822_cov1420447170	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
Bfucscaffold91315_cov1480477190	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Bfucscaffold91396_cov1220483260	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Bfucscaffold91817_cov1480491980	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Bfucscaffold91842_cov2040494350	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Bfucscaffold1700_cov1560117960	Alkaloid	TYDC_DDC	medium	borderline	TYDC_DDC__00003__sp_P17770_TDC_CATRO
Bfucscaffold2529_cov1470204490	Alkaloid	TYDC_DDC	medium	borderline	TYDC_DDC__00003__sp_P17770_TDC_CATRO
Bfucscaffold347_cov1400280110	Alkaloid	TYDC_DDC	medium	borderline	TYDC_DDC__00003__sp_P17770_TDC_CATRO
Bfucscaffold511_cov1190363740	Alkaloid	TYDC_DDC	medium	borderline	TYDC_DDC__00003__sp_P17770_TDC_CATRO
Bfucscaffold781_cov1310434590	Alkaloid	TYDC_DDC	medium	borderline	TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bfucscaffold91224_cov1640469520	Alkaloid	XMT_MXMT_DXMT	medium	borderline	XMT_MXMT_DXMT__00006__sp_A4GE70_DXMT1_COFCA
Bfucscaffold91439_cov1270486330	Alkaloid	XMT_MXMT_DXMT	medium	borderline	XMT_MXMT_DXMT__00003__sp_A0A0S2PMA8_TCS1D_CAMTA
Bfucscaffold9498_cov2000508640	Alkaloid	XMT_MXMT_DXMT	medium	pass	XMT_MXMT_DXMT__00003__sp_A0A0S2PMA8_TCS1D_CAMTA