Brassica oleracea (brassica_oleracea)
Imported from atlas release summary for Brassica oleracea.
2915
Candidate Protein Records
2262
Pathway-Level Records
5805
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5805
Family-Level Calls
C4H
6.18%
BAHD
6.15%
C3'H/CYP98A
6.1%
CYP76
4.05%
IFS
3.88%
POD
3.81%
4CL
3.41%
UGT
3.39%
Other Families
63.03%
More Families (97)
UFGT
179
3.08%
7DLGT
173
2.98%
T3O
170
2.93%
F3H
167
2.88%
DWF4/CYP90B1
153
2.64%
NMT
145
2.5%
BR6OX2/CYP85A2
120
2.07%
F3'H/CYP75B
103
1.77%
CODM/T6ODM
101
1.74%
H6H
97
1.67%
STR
92
1.58%
SGD
92
1.58%
CYP71
87
1.5%
SMT1/SMT2/SMT3
86
1.48%
TRI/TRII
74
1.27%
CSE
70
1.21%
COMT
62
1.07%
SLS
60
1.03%
T16H
60
1.03%
CAD
60
1.03%
TPS
60
1.03%
CAS
56
0.96%
G8O/G8H
52
0.9%
PYKS
52
0.9%
BBE
50
0.86%
LAC
48
0.83%
F3'5'H/CYP75A
47
0.81%
GES
45
0.78%
FNS
45
0.78%
IO
44
0.76%
IFR
44
0.76%
F5H/CYP84A
42
0.72%
CYP90D1
41
0.71%
HMGR
40
0.69%
RAS
38
0.65%
TAT
36
0.62%
16OMT
35
0.6%
GS
31
0.53%
ANR
31
0.53%
LAMT
30
0.52%
PAL
30
0.52%
CPD/CYP90A1
29
0.5%
7DLH
28
0.48%
ANS/LDOX
28
0.48%
CCR
28
0.48%
HCT
27
0.47%
CCoAOMT
26
0.45%
CYP51G1
25
0.43%
BR6OX1/CYP85A1
22
0.38%
8HGO
21
0.36%
GGPPS
21
0.36%
NCS
18
0.31%
CPR
18
0.31%
FPPS
17
0.29%
PMT
16
0.28%
SQE
16
0.28%
COR
15
0.26%
DFR
15
0.26%
CNMT
14
0.24%
MPO
14
0.24%
CYP80B1
12
0.21%
FLS
10
0.17%
CHS
10
0.17%
ROT3/CYP90C1
10
0.17%
AACT
10
0.17%
CYP719
9
0.16%
XMT_MXMT_DXMT
9
0.16%
CYP80F1
9
0.16%
HPPR
9
0.16%
SQS/FDFT1
9
0.16%
SMO1/SMO2
9
0.16%
DWF1
8
0.14%
ADC
7
0.12%
TYDC_DDC
7
0.12%
CHI
7
0.12%
DWF7
7
0.12%
IDI
7
0.12%
MVD
7
0.12%
MVK
7
0.12%
ISY
6
0.1%
TDC
4
0.07%
HDR/IspH
4
0.07%
DXS
4
0.07%
MCT/IspD
4
0.07%
DWF5
3
0.05%
DET2
3
0.05%
DXR
3
0.05%
MDS/IspF
3
0.05%
6OMT_4OMT_SOMT
2
0.03%
CPI1
2
0.03%
HYD1
2
0.03%
FK
2
0.03%
HMGS
2
0.03%
PMK
2
0.03%
HDS/IspG
2
0.03%
CMK/IspE
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 710 | 22 | BAHD (286) | View species results |
| Alkaloid pathway | 489 | 23 | 7DLGT (81) | View species results |
| Phenylpropanoid pathway | 475 | 12 | POD (207) | View species results |
| Flavonoid pathway | 262 | 13 | UFGT (166) | View species results |
| Rosmarinic acid pathway | 181 | 7 | C4H (74) | View species results |
| Steroid pathway | 145 | 14 | SMT1/SMT2/SMT3 (52) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2296 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 422 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bo3g021180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo3g030080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo3g035530.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo3g035540.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo3g035550.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo3g035760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo3g039870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo3g087160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g013140.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo4g013150.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo4g026540.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g030690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g030700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g030940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g107870.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo4g112550.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo4g112560.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo4g117050.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g117110.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g117130.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g117140.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g117160.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g136080.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g161200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g170600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g186210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g186800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g186860.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo5g009020.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo5g009950.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo5g020620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo5g020640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo5g021040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo5g068150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo5g092940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo5g104970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo5g126190.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo6g026020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo6g031430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo6g031460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo6g042620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo6g067490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo6g068540.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo6g072600.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo6g076540.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo6g079920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo6g087220.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Bo6g087330.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Bo6g087350.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Bo6g087400.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |