PlantSME Plant secondary metabolism enzyme database

Bryum knowltonii (bryum_knowltonii)

Imported from atlas release summary for Bryum knowltonii.

1560
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Alkaloid pathway 24.1% Terpenoid pathway 23.85% Phenylpropanoid pathway 22.76% Flavonoid pathway 14.68% Rosmarinic acid pathway 8.97% Steroid pathway 5.64%
Family Distribution
NMT 7.18% C4H 6.04% BAHD 5.5% C3'H/CYP98A 5.35% POD 4.56% CYP76 4.36% 4CL 3.97% PAL 2.9%
Other Families 60.14%
More Families (97)
UGT 99 2.52% F3'H/CYP75B 97 2.47% 7DLGT 94 2.39% UFGT 94 2.39% BR6OX2/CYP85A2 92 2.34% T3O 89 2.27% STR 87 2.22% PYKS 85 2.17% IFS 83 2.11% GS 80 2.04% DWF4/CYP90B1 80 2.04% F3H 66 1.68% IFR 64 1.63% CHS 61 1.55% SMT1/SMT2/SMT3 54 1.38% CAD 48 1.22% IO 46 1.17% TRI/TRII 45 1.15% CODM/T6ODM 43 1.1% G8O/G8H 40 1.02% F3'5'H/CYP75A 38 0.97% CYP71 38 0.97% CAS 34 0.87% H6H 32 0.82% LAC 29 0.74% HCT 29 0.74% SLS 26 0.66% 8HGO 26 0.66% CNMT 25 0.64% T16H 24 0.61% COMT 24 0.61% RAS 24 0.61% CYP90D1 23 0.59% SGD 21 0.53% FNS 20 0.51% TAT 20 0.51% CSE 19 0.48% ANR 18 0.46% CCR 17 0.43% CPD/CYP90A1 16 0.41% CYP719 15 0.38% COR 15 0.38% CYP80B1 14 0.36% CPR 14 0.36% BR6OX1/CYP85A1 14 0.36% HDS/IspG 14 0.36% NCS 13 0.33% 7DLH 13 0.33% CCoAOMT 13 0.33% BBE 12 0.31% F5H/CYP84A 11 0.28% SQS/FDFT1 11 0.28% 16OMT 10 0.25% PMT 10 0.25% SMO1/SMO2 10 0.25% AACT 10 0.25% GGPPS 10 0.25% XMT_MXMT_DXMT 9 0.23% MCT/IspD 9 0.23% ANS/LDOX 8 0.2% DFR 8 0.2% DET2 8 0.2% DWF5 8 0.2% MVK 8 0.2% TPS 8 0.2% ADC 7 0.18% CYP51G1 7 0.18% SQE 7 0.18% TYDC_DDC 6 0.15% TDC 6 0.15% CYP80F1 6 0.15% MPO 6 0.15% GES 6 0.15% ROT3/CYP90C1 6 0.15% HDR/IspH 6 0.15% DXS 6 0.15% IDI 6 0.15% LAMT 5 0.13% DXR 5 0.13% MVD 5 0.13% CHI 4 0.1% FLS 4 0.1% DWF7 4 0.1% HMGR 4 0.1% FPPS 4 0.1% 6OMT_4OMT_SOMT 3 0.08% HPPR 3 0.08% HYD1 3 0.08% CMK/IspE 3 0.08% CPI1 2 0.05% DWF1 2 0.05% FK 2 0.05% MDS/IspF 2 0.05% HMGS 2 0.05% PMK 2 0.05% ISY 1 0.03% GPPS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Alkaloid pathway 376 20 NMT (105) View species results
Terpenoid pathway 372 19 BAHD (133) View species results
Phenylpropanoid pathway 355 10 POD (162) View species results
Flavonoid pathway 229 11 UFGT (86) View species results
Rosmarinic acid pathway 140 6 C4H (55) View species results
Steroid pathway 88 13 CAS (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1396 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 269 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Bknoscaffold_100034060 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Bknoscaffold_110095530 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Bknoscaffold_150186650 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Bknoscaffold_150210130 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Bknoscaffold_160213040 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Bknoscaffold_160281560 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Bknoscaffold_170286890 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Bknoscaffold_170326000 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Bknoscaffold_200463650 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Bknoscaffold_220500030 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Bknoscaffold_230545940 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Bknoscaffold_80766410 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Bknoscaffold_80808770 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA