Bryum knowltonii (bryum_knowltonii)
Imported from atlas release summary for Bryum knowltonii.
1560
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1560
Candidate Genes
NMT
7.18%
C4H
6.04%
BAHD
5.5%
C3'H/CYP98A
5.35%
POD
4.56%
CYP76
4.36%
4CL
3.97%
PAL
2.9%
Other Families
60.14%
More Families (97)
UGT
99
2.52%
F3'H/CYP75B
97
2.47%
7DLGT
94
2.39%
UFGT
94
2.39%
BR6OX2/CYP85A2
92
2.34%
T3O
89
2.27%
STR
87
2.22%
PYKS
85
2.17%
IFS
83
2.11%
GS
80
2.04%
DWF4/CYP90B1
80
2.04%
F3H
66
1.68%
IFR
64
1.63%
CHS
61
1.55%
SMT1/SMT2/SMT3
54
1.38%
CAD
48
1.22%
IO
46
1.17%
TRI/TRII
45
1.15%
CODM/T6ODM
43
1.1%
G8O/G8H
40
1.02%
F3'5'H/CYP75A
38
0.97%
CYP71
38
0.97%
CAS
34
0.87%
H6H
32
0.82%
LAC
29
0.74%
HCT
29
0.74%
SLS
26
0.66%
8HGO
26
0.66%
CNMT
25
0.64%
T16H
24
0.61%
COMT
24
0.61%
RAS
24
0.61%
CYP90D1
23
0.59%
SGD
21
0.53%
FNS
20
0.51%
TAT
20
0.51%
CSE
19
0.48%
ANR
18
0.46%
CCR
17
0.43%
CPD/CYP90A1
16
0.41%
CYP719
15
0.38%
COR
15
0.38%
CYP80B1
14
0.36%
CPR
14
0.36%
BR6OX1/CYP85A1
14
0.36%
HDS/IspG
14
0.36%
NCS
13
0.33%
7DLH
13
0.33%
CCoAOMT
13
0.33%
BBE
12
0.31%
F5H/CYP84A
11
0.28%
SQS/FDFT1
11
0.28%
16OMT
10
0.25%
PMT
10
0.25%
SMO1/SMO2
10
0.25%
AACT
10
0.25%
GGPPS
10
0.25%
XMT_MXMT_DXMT
9
0.23%
MCT/IspD
9
0.23%
ANS/LDOX
8
0.2%
DFR
8
0.2%
DET2
8
0.2%
DWF5
8
0.2%
MVK
8
0.2%
TPS
8
0.2%
ADC
7
0.18%
CYP51G1
7
0.18%
SQE
7
0.18%
TYDC_DDC
6
0.15%
TDC
6
0.15%
CYP80F1
6
0.15%
MPO
6
0.15%
GES
6
0.15%
ROT3/CYP90C1
6
0.15%
HDR/IspH
6
0.15%
DXS
6
0.15%
IDI
6
0.15%
LAMT
5
0.13%
DXR
5
0.13%
MVD
5
0.13%
CHI
4
0.1%
FLS
4
0.1%
DWF7
4
0.1%
HMGR
4
0.1%
FPPS
4
0.1%
6OMT_4OMT_SOMT
3
0.08%
HPPR
3
0.08%
HYD1
3
0.08%
CMK/IspE
3
0.08%
CPI1
2
0.05%
DWF1
2
0.05%
FK
2
0.05%
MDS/IspF
2
0.05%
HMGS
2
0.05%
PMK
2
0.05%
ISY
1
0.03%
GPPS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Alkaloid pathway | 376 | 20 | NMT (105) | View species results |
| Terpenoid pathway | 372 | 19 | BAHD (133) | View species results |
| Phenylpropanoid pathway | 355 | 10 | POD (162) | View species results |
| Flavonoid pathway | 229 | 11 | UFGT (86) | View species results |
| Rosmarinic acid pathway | 140 | 6 | C4H (55) | View species results |
| Steroid pathway | 88 | 13 | CAS (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1396 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 269 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bknoscaffold_220510330 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_230534400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_230542310 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_230551420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_40574090 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_50599770 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_60616080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_60619350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_60627490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_60632680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_60632690 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_60634980 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bknoscaffold_60680080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_70703710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_70744360 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bknoscaffold_70750520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_70752250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_70752260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_70758030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_70762400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_80767910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_80767920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_80770570 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bknoscaffold_80799280 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bknoscaffold_80803400 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_80804300 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_80808610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_80808620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_80810100 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_90812160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_90813510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_90813520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_90817320 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_90821170 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bknoscaffold_90849220 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bknoscaffold_90854580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bknoscaffold_90854590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |