Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1432
Candidate Protein Records
1197
Pathway-Level Records
2835
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2835
Family-Level Calls
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cr_22925.1|scaffold1112:95127-96128|plus| | Alkaloid | GES | medium | pass |
| Cr_23786.1|scaffold1891:26028-28019|plus| | Alkaloid | GES | medium | pass |
| Cr_23990.1|scaffold2072:27147-28205|minus| | Alkaloid | GES | medium | pass |
| Cr_24548.1|scaffold2735:20996-21288|plus| | Alkaloid | GES | medium | pass |
| Cr_25084.1|scaffold4027:4985-6039|plus| | Alkaloid | GES | medium | pass |
| Cr_25113.1|scaffold4167:2764-3605|plus| | Alkaloid | GES | medium | pass |
| Cr_00153.1|Cr_LG_1:1294517-1297684|minus| | Alkaloid | GS | high | pass |
| Cr_00676.1|Cr_LG_1:7144893-7148101|plus| | Alkaloid | GS | low | borderline |
| Cr_00677.1|Cr_LG_1:7148696-7150686|plus| | Alkaloid | GS | low | borderline |
| Cr_00755.1|Cr_LG_1:8433213-8436869|plus| | Alkaloid | GS | low | borderline |
| Cr_03658.1|Cr_LG_2:8106305-8109515|minus| | Alkaloid | GS | low | borderline |
| Cr_04576.1|Cr_LG_2:26490579-26494200|minus| | Alkaloid | GS | low | borderline |
| Cr_04877.1|Cr_LG_2:30507054-30509596|plus| | Alkaloid | GS | low | borderline |
| Cr_05257.1|Cr_LG_3:2547310-2553344|plus| | Alkaloid | GS | medium | pass |
| Cr_05777.1|Cr_LG_3:7979160-7982381|plus| | Alkaloid | GS | medium | pass |
| Cr_06460.1|Cr_LG_3:16928158-16930826|plus| | Alkaloid | GS | low | borderline |
| Cr_07868.1|Cr_LG_4:1566013-1568536|minus| | Alkaloid | GS | high | pass |
| Cr_10322.1|Cr_LG_4:33583334-33587012|plus| | Alkaloid | GS | high | pass |
| Cr_11214.1|Cr_LG_5:1840-6136|plus| | Alkaloid | GS | low | borderline |
| Cr_12959.1|Cr_LG_5:21913701-21915555|plus| | Alkaloid | GS | low | borderline |
| Cr_15042.1|Cr_LG_6:11386034-11389623|minus| | Alkaloid | GS | high | pass |
| Cr_17258.1|Cr_LG_6:45932687-45938031|plus| | Alkaloid | GS | low | borderline |
| Cr_17360.1|Cr_LG_6:48137892-48141131|plus| | Alkaloid | GS | low | borderline |
| Cr_18395.1|Cr_LG_7:6618607-6621050|minus| | Alkaloid | GS | low | borderline |
| Cr_22262.1|scaffold162:215084-218441|minus| | Alkaloid | GS | high | pass |
| Cr_22268.1|scaffold162:239882-242096|minus| | Alkaloid | GS | high | pass |
| Cr_22280.1|scaffold162:202777-205757|plus| | Alkaloid | GS | high | pass |
| Cr_22282.1|scaffold162:249310-251507|plus| | Alkaloid | GS | high | pass |
| Cr_22286.1|scaffold162:198860-200709|minus| | Alkaloid | GS | high | pass |
| Cr_24403.1|scaffold2549:6553-9383|plus| | Alkaloid | GS | low | borderline |
| Cr_00065.1|Cr_LG_1:559315-562072|plus| | Alkaloid | H6H | low | borderline |
| Cr_01506.1|Cr_LG_1:16926197-16941563|minus| | Alkaloid | H6H | medium | borderline |
| Cr_02605.1|Cr_LG_1:37120464-37121093|minus| | Alkaloid | H6H | medium | borderline |
| Cr_03020.1|Cr_LG_1:41428492-41429917|plus| | Alkaloid | H6H | low | borderline |
| Cr_04080.1|Cr_LG_2:15779145-15786071|minus| | Alkaloid | H6H | medium | borderline |
| Cr_04708.1|Cr_LG_2:28316839-28318062|minus| | Alkaloid | H6H | medium | borderline |
| Cr_06863.1|Cr_LG_3:26031785-26036752|plus| | Alkaloid | H6H | medium | borderline |
| Cr_06864.1|Cr_LG_3:26057566-26061824|minus| | Alkaloid | H6H | medium | borderline |
| Cr_07214.1|Cr_LG_3:33899198-33902165|minus| | Alkaloid | H6H | medium | borderline |
| Cr_07327.1|Cr_LG_3:35565535-35566734|minus| | Alkaloid | H6H | low | borderline |
| Cr_08027.1|Cr_LG_4:3810179-3811903|minus| | Alkaloid | H6H | low | borderline |
| Cr_08986.1|Cr_LG_4:17083426-17085250|minus| | Alkaloid | H6H | medium | borderline |
| Cr_09309.1|Cr_LG_4:20487620-20492576|minus| | Alkaloid | H6H | low | borderline |
| Cr_09487.1|Cr_LG_4:22737358-22739918|minus| | Alkaloid | H6H | medium | borderline |
| Cr_09493.1|Cr_LG_4:22791605-22793372|minus| | Alkaloid | H6H | medium | pass |
| Cr_09538.1|Cr_LG_4:23319185-23325604|minus| | Alkaloid | H6H | low | borderline |
| Cr_09663.1|Cr_LG_4:24779606-24785551|plus| | Alkaloid | H6H | low | borderline |
| Cr_09664.1|Cr_LG_4:24811816-24814109|minus| | Alkaloid | H6H | medium | pass |
| Cr_10042.1|Cr_LG_4:30285938-30287303|minus| | Alkaloid | H6H | medium | borderline |
| Cr_10276.1|Cr_LG_4:33120963-33123045|plus| | Alkaloid | H6H | medium | borderline |