PlantSME Plant secondary metabolism enzyme database

Cinchona pubescens (cinchona_pubescens)

Imported from atlas release summary for Cinchona pubescens.

2119
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 624 20 UGT (263) View species results
Alkaloid pathway 524 24 7DLGT (112) View species results
Phenylpropanoid pathway 425 11 POD (142) View species results
Flavonoid pathway 287 13 UFGT (185) View species results
Rosmarinic acid pathway 164 7 C4H (64) View species results
Steroid pathway 95 12 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2396 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ANS/LDOX
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Gene Pathway Family Confidence Status
cinchona_pubescens_g11602.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g11621.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g17164.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g17174.t1 Flavonoid ANS/LDOX low borderline
cinchona_pubescens_g17548.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g17582.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g18412.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g18858.t1 Flavonoid ANS/LDOX medium pass
cinchona_pubescens_g18859.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g19290.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g19364.t1 Flavonoid ANS/LDOX low borderline
cinchona_pubescens_g24857.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g26453.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g26609.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g30779.t1 Flavonoid ANS/LDOX medium pass
cinchona_pubescens_g32381.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g38183.t1 Flavonoid ANS/LDOX low borderline
cinchona_pubescens_g38185.t1 Flavonoid ANS/LDOX low borderline
cinchona_pubescens_g41439.t1 Flavonoid ANS/LDOX low borderline
cinchona_pubescens_g41954.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g43122.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g43500.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g44364.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g46408.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g48658.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g50756.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g51174.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g51880.t1 Flavonoid ANS/LDOX low borderline
cinchona_pubescens_g51899.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g53261.t1 Flavonoid ANS/LDOX low borderline
cinchona_pubescens_g54533.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g55722.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g59314.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g69112.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g71840.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g7562.t1 Flavonoid ANS/LDOX medium borderline
cinchona_pubescens_g7919.t1 Flavonoid ANS/LDOX medium borderline