Cinchona pubescens (cinchona_pubescens)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 29.45% Alkaloid pathway 24.73% Phenylpropanoid pathway 20.06% Flavonoid pathway 13.54% Rosmarinic acid pathway 7.74% Steroid pathway 4.48%

Family Distribution

2119 Candidate Genes

C4H 6.82% C3'H/CYP98A 5.56% UGT 5.15% BAHD 4.57% 7DLGT 4.49% CYP76 3.94% UFGT 3.92% IFS 3.33%

Other Families 62.22%

More Families (96)

4CL 174 2.97% POD 166 2.83% DWF4/CYP90B1 145 2.47% T3O 143 2.44% F3H 141 2.4% F3'H/CYP75B 137 2.34% BR6OX2/CYP85A2 122 2.08% NMT 111 1.89% CAD 108 1.84% SGD 105 1.79% CODM/T6ODM 100 1.71% STR 97 1.65% CYP71 87 1.48% T16H 84 1.43% H6H 81 1.38% GS 79 1.35% G8O/G8H 77 1.31% F5H/CYP84A 64 1.09% TPS 63 1.07% GES 60 1.02% IO 58 0.99% F3'5'H/CYP75A 56 0.96% SMT1/SMT2/SMT3 56 0.96% FNS 54 0.92% LAC 54 0.92% CSE 52 0.89% CAS 52 0.89% SLS 51 0.87% CYP90D1 49 0.84% 7DLH 44 0.75% TRI/TRII 44 0.75% TAT 44 0.75% BBE 43 0.73% IFR 42 0.72% HCT 40 0.68% PAL 39 0.67% NCS 38 0.65% ANS/LDOX 37 0.63% RAS 36 0.61% PYKS 33 0.56% COMT 33 0.56% BR6OX1/CYP85A1 32 0.55% COR 30 0.51% CPD/CYP90A1 28 0.48% DFR 26 0.44% LAMT 25 0.43% CYP51G1 23 0.39% CCR 22 0.38% PMT 20 0.34% ANR 19 0.32% 8HGO 18 0.31% ROT3/CYP90C1 18 0.31% 16OMT 17 0.29% CCoAOMT 16 0.27% CYP719 15 0.26% FPPS 15 0.26% CNMT 13 0.22% AACT 13 0.22% GGPPS 12 0.2% HPPR 10 0.17% SQE 10 0.17% MPO 9 0.15% FLS 9 0.15% DET2 9 0.15% CYP80B1 8 0.14% CPR 8 0.14% SQS/FDFT1 8 0.14% HMGR 8 0.14% DXS 8 0.14% ISY 7 0.12% MVK 7 0.12% TDC 6 0.1% XMT_MXMT_DXMT 6 0.1% CHI 6 0.1% MVD 6 0.1% DWF1 5 0.09% CMK/IspE 5 0.09% IDI 5 0.09% HDS/IspG 5 0.09% CHS 4 0.07% SMO1/SMO2 4 0.07% HYD1 4 0.07% HMGS 4 0.07% DXR 4 0.07% CYP80F1 3 0.05% ADC 3 0.05% HDR/IspH 3 0.05% MCT/IspD 3 0.05% DWF5 2 0.03% PMK 2 0.03% 6OMT_4OMT_SOMT 1 0.02% TYDC_DDC 1 0.02% CPI1 1 0.02% FK 1 0.02% MDS/IspF 1 0.02% GPPS 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	624	20	UGT (263)	View species results
Alkaloid pathway	524	24	7DLGT (112)	View species results
Phenylpropanoid pathway	425	11	POD (142)	View species results
Flavonoid pathway	287	13	UFGT (185)	View species results
Rosmarinic acid pathway	164	7	C4H (64)	View species results
Steroid pathway	95	12	CAS (35)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	2396	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	344	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CCR

Gene	Pathway	Family	Confidence	Status	Best Target
cinchona_pubescens_g18106.t1	Phenylpropanoid	CCR	low	borderline	CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
cinchona_pubescens_g20764.t1	Phenylpropanoid	CCR	medium	borderline	CCR__00004__sp_G7JEE5_CCR2_MEDTR
cinchona_pubescens_g22756.t1	Phenylpropanoid	CCR	medium	pass	CCR__00007__sp_Q9CA28_TKPR2_ARATH
cinchona_pubescens_g23306.t1	Phenylpropanoid	CCR	medium	pass	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
cinchona_pubescens_g26118.t1	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
cinchona_pubescens_g30023.t1	Phenylpropanoid	CCR	medium	borderline	CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
cinchona_pubescens_g30026.t1	Phenylpropanoid	CCR	low	borderline	CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
cinchona_pubescens_g30647.t1	Phenylpropanoid	CCR	low	borderline	CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
cinchona_pubescens_g36888.t1	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
cinchona_pubescens_g37605.t1	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
cinchona_pubescens_g37606.t1	Phenylpropanoid	CCR	medium	pass	CCR__00004__sp_G7JEE5_CCR2_MEDTR
cinchona_pubescens_g37607.t1	Phenylpropanoid	CCR	medium	borderline	CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
cinchona_pubescens_g37835.t1	Phenylpropanoid	CCR	medium	borderline	CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
cinchona_pubescens_g38548.t1	Phenylpropanoid	CCR	medium	pass	CCR__00007__sp_Q9CA28_TKPR2_ARATH
cinchona_pubescens_g51349.t1	Phenylpropanoid	CCR	medium	borderline	CCR__00007__sp_Q9CA28_TKPR2_ARATH
cinchona_pubescens_g56939.t1	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
cinchona_pubescens_g56945.t1	Phenylpropanoid	CCR	medium	pass	CCR__00001__sp_A0A059TC02_CCR1_PETHY
cinchona_pubescens_g61819.t1	Phenylpropanoid	CCR	low	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
cinchona_pubescens_g61824.t1	Phenylpropanoid	CCR	low	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
cinchona_pubescens_g62820.t1	Phenylpropanoid	CCR	medium	pass	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
cinchona_pubescens_g68357.t1	Phenylpropanoid	CCR	medium	pass	CCR__00007__sp_Q9CA28_TKPR2_ARATH
cinchona_pubescens_g69755.t1	Phenylpropanoid	CCR	medium	pass	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ