PlantSME Plant secondary metabolism enzyme database

Cinchona pubescens (cinchona_pubescens)

Imported from atlas release summary for Cinchona pubescens.

2119
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.45% Alkaloid pathway 24.73% Phenylpropanoid pathway 20.06% Flavonoid pathway 13.54% Rosmarinic acid pathway 7.74% Steroid pathway 4.48%
Family Distribution
C4H 6.82% C3'H/CYP98A 5.56% UGT 5.15% BAHD 4.57% 7DLGT 4.49% CYP76 3.94% UFGT 3.92% IFS 3.33%
Other Families 62.22%
More Families (96)
4CL 174 2.97% POD 166 2.83% DWF4/CYP90B1 145 2.47% T3O 143 2.44% F3H 141 2.4% F3'H/CYP75B 137 2.34% BR6OX2/CYP85A2 122 2.08% NMT 111 1.89% CAD 108 1.84% SGD 105 1.79% CODM/T6ODM 100 1.71% STR 97 1.65% CYP71 87 1.48% T16H 84 1.43% H6H 81 1.38% GS 79 1.35% G8O/G8H 77 1.31% F5H/CYP84A 64 1.09% TPS 63 1.07% GES 60 1.02% IO 58 0.99% F3'5'H/CYP75A 56 0.96% SMT1/SMT2/SMT3 56 0.96% FNS 54 0.92% LAC 54 0.92% CSE 52 0.89% CAS 52 0.89% SLS 51 0.87% CYP90D1 49 0.84% 7DLH 44 0.75% TRI/TRII 44 0.75% TAT 44 0.75% BBE 43 0.73% IFR 42 0.72% HCT 40 0.68% PAL 39 0.67% NCS 38 0.65% ANS/LDOX 37 0.63% RAS 36 0.61% PYKS 33 0.56% COMT 33 0.56% BR6OX1/CYP85A1 32 0.55% COR 30 0.51% CPD/CYP90A1 28 0.48% DFR 26 0.44% LAMT 25 0.43% CYP51G1 23 0.39% CCR 22 0.38% PMT 20 0.34% ANR 19 0.32% 8HGO 18 0.31% ROT3/CYP90C1 18 0.31% 16OMT 17 0.29% CCoAOMT 16 0.27% CYP719 15 0.26% FPPS 15 0.26% CNMT 13 0.22% AACT 13 0.22% GGPPS 12 0.2% HPPR 10 0.17% SQE 10 0.17% MPO 9 0.15% FLS 9 0.15% DET2 9 0.15% CYP80B1 8 0.14% CPR 8 0.14% SQS/FDFT1 8 0.14% HMGR 8 0.14% DXS 8 0.14% ISY 7 0.12% MVK 7 0.12% TDC 6 0.1% XMT_MXMT_DXMT 6 0.1% CHI 6 0.1% MVD 6 0.1% DWF1 5 0.09% CMK/IspE 5 0.09% IDI 5 0.09% HDS/IspG 5 0.09% CHS 4 0.07% SMO1/SMO2 4 0.07% HYD1 4 0.07% HMGS 4 0.07% DXR 4 0.07% CYP80F1 3 0.05% ADC 3 0.05% HDR/IspH 3 0.05% MCT/IspD 3 0.05% DWF5 2 0.03% PMK 2 0.03% 6OMT_4OMT_SOMT 1 0.02% TYDC_DDC 1 0.02% CPI1 1 0.02% FK 1 0.02% MDS/IspF 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 624 20 UGT (263) View species results
Alkaloid pathway 524 24 7DLGT (112) View species results
Phenylpropanoid pathway 425 11 POD (142) View species results
Flavonoid pathway 287 13 UFGT (185) View species results
Rosmarinic acid pathway 164 7 C4H (64) View species results
Steroid pathway 95 12 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2396 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
cinchona_pubescens_g16469.t1 Alkaloid PMT medium borderline
cinchona_pubescens_g1671.t1 Alkaloid PMT medium borderline
cinchona_pubescens_g21080.t1 Alkaloid PMT low borderline
cinchona_pubescens_g21791.t1 Alkaloid PMT medium pass
cinchona_pubescens_g2186.t1 Alkaloid PMT medium pass
cinchona_pubescens_g22308.t1 Alkaloid PMT medium borderline
cinchona_pubescens_g26600.t1 Alkaloid PMT low borderline
cinchona_pubescens_g30703.t1 Alkaloid PMT low borderline
cinchona_pubescens_g30713.t1 Alkaloid PMT medium pass
cinchona_pubescens_g3793.t1 Alkaloid PMT low borderline
cinchona_pubescens_g39317.t1 Alkaloid PMT low borderline
cinchona_pubescens_g43000.t1 Alkaloid PMT medium borderline
cinchona_pubescens_g44733.t1 Alkaloid PMT medium pass
cinchona_pubescens_g44734.t1 Alkaloid PMT medium pass
cinchona_pubescens_g44973.t1 Alkaloid PMT low borderline
cinchona_pubescens_g45169.t1 Alkaloid PMT medium pass
cinchona_pubescens_g61275.t1 Alkaloid PMT low borderline
cinchona_pubescens_g65596.t1 Alkaloid PMT medium pass
cinchona_pubescens_g67.t1 Alkaloid PMT low borderline
cinchona_pubescens_g8107.t1 Alkaloid PMT low borderline