Cinchona pubescens (cinchona_pubescens)
Imported from atlas release summary for Cinchona pubescens.
2119
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2119
Candidate Genes
C4H
6.82%
C3'H/CYP98A
5.56%
UGT
5.15%
BAHD
4.57%
7DLGT
4.49%
CYP76
3.94%
UFGT
3.92%
IFS
3.33%
Other Families
62.22%
More Families (96)
4CL
174
2.97%
POD
166
2.83%
DWF4/CYP90B1
145
2.47%
T3O
143
2.44%
F3H
141
2.4%
F3'H/CYP75B
137
2.34%
BR6OX2/CYP85A2
122
2.08%
NMT
111
1.89%
CAD
108
1.84%
SGD
105
1.79%
CODM/T6ODM
100
1.71%
STR
97
1.65%
CYP71
87
1.48%
T16H
84
1.43%
H6H
81
1.38%
GS
79
1.35%
G8O/G8H
77
1.31%
F5H/CYP84A
64
1.09%
TPS
63
1.07%
GES
60
1.02%
IO
58
0.99%
F3'5'H/CYP75A
56
0.96%
SMT1/SMT2/SMT3
56
0.96%
FNS
54
0.92%
LAC
54
0.92%
CSE
52
0.89%
CAS
52
0.89%
SLS
51
0.87%
CYP90D1
49
0.84%
7DLH
44
0.75%
TRI/TRII
44
0.75%
TAT
44
0.75%
BBE
43
0.73%
IFR
42
0.72%
HCT
40
0.68%
PAL
39
0.67%
NCS
38
0.65%
ANS/LDOX
37
0.63%
RAS
36
0.61%
PYKS
33
0.56%
COMT
33
0.56%
BR6OX1/CYP85A1
32
0.55%
COR
30
0.51%
CPD/CYP90A1
28
0.48%
DFR
26
0.44%
LAMT
25
0.43%
CYP51G1
23
0.39%
CCR
22
0.38%
PMT
20
0.34%
ANR
19
0.32%
8HGO
18
0.31%
ROT3/CYP90C1
18
0.31%
16OMT
17
0.29%
CCoAOMT
16
0.27%
CYP719
15
0.26%
FPPS
15
0.26%
CNMT
13
0.22%
AACT
13
0.22%
GGPPS
12
0.2%
HPPR
10
0.17%
SQE
10
0.17%
MPO
9
0.15%
FLS
9
0.15%
DET2
9
0.15%
CYP80B1
8
0.14%
CPR
8
0.14%
SQS/FDFT1
8
0.14%
HMGR
8
0.14%
DXS
8
0.14%
ISY
7
0.12%
MVK
7
0.12%
TDC
6
0.1%
XMT_MXMT_DXMT
6
0.1%
CHI
6
0.1%
MVD
6
0.1%
DWF1
5
0.09%
CMK/IspE
5
0.09%
IDI
5
0.09%
HDS/IspG
5
0.09%
CHS
4
0.07%
SMO1/SMO2
4
0.07%
HYD1
4
0.07%
HMGS
4
0.07%
DXR
4
0.07%
CYP80F1
3
0.05%
ADC
3
0.05%
HDR/IspH
3
0.05%
MCT/IspD
3
0.05%
DWF5
2
0.03%
PMK
2
0.03%
6OMT_4OMT_SOMT
1
0.02%
TYDC_DDC
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
MDS/IspF
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 624 | 20 | UGT (263) | View species results |
| Alkaloid pathway | 524 | 24 | 7DLGT (112) | View species results |
| Phenylpropanoid pathway | 425 | 11 | POD (142) | View species results |
| Flavonoid pathway | 287 | 13 | UFGT (185) | View species results |
| Rosmarinic acid pathway | 164 | 7 | C4H (64) | View species results |
| Steroid pathway | 95 | 12 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2396 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 344 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| cinchona_pubescens_g11411.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g11527.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g11529.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g11530.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g11532.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g11533.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g17016.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g1761.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g22757.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g27608.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g2779.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g30428.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g32861.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g38546.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g44018.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g45034.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g45406.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g46329.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g46330.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g48391.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g49307.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g53158.t1 | Alkaloid | PYKS | high | pass |
| cinchona_pubescens_g53163.t1 | Alkaloid | PYKS | high | pass |
| cinchona_pubescens_g5537.t1 | Alkaloid | PYKS | medium | pass |
| cinchona_pubescens_g57652.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g57788.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g5993.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g61755.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g62338.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g64214.t1 | Alkaloid | PYKS | high | pass |
| cinchona_pubescens_g65482.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g67270.t1 | Alkaloid | PYKS | low | borderline |
| cinchona_pubescens_g8124.t1 | Alkaloid | PYKS | low | borderline |