Cinchona pubescens (cinchona_pubescens)
Imported from atlas release summary for Cinchona pubescens.
2726
Candidate Protein Records
2119
Pathway-Level Records
5863
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5863
Family-Level Calls
C4H
6.82%
C3'H/CYP98A
5.56%
UGT
5.15%
BAHD
4.57%
7DLGT
4.49%
CYP76
3.94%
UFGT
3.92%
IFS
3.33%
Other Families
62.22%
More Families (96)
4CL
174
2.97%
POD
166
2.83%
DWF4/CYP90B1
145
2.47%
T3O
143
2.44%
F3H
141
2.4%
F3'H/CYP75B
137
2.34%
BR6OX2/CYP85A2
122
2.08%
NMT
111
1.89%
CAD
108
1.84%
SGD
105
1.79%
CODM/T6ODM
100
1.71%
STR
97
1.65%
CYP71
87
1.48%
T16H
84
1.43%
H6H
81
1.38%
GS
79
1.35%
G8O/G8H
77
1.31%
F5H/CYP84A
64
1.09%
TPS
63
1.07%
GES
60
1.02%
IO
58
0.99%
F3'5'H/CYP75A
56
0.96%
SMT1/SMT2/SMT3
56
0.96%
FNS
54
0.92%
LAC
54
0.92%
CSE
52
0.89%
CAS
52
0.89%
SLS
51
0.87%
CYP90D1
49
0.84%
7DLH
44
0.75%
TRI/TRII
44
0.75%
TAT
44
0.75%
BBE
43
0.73%
IFR
42
0.72%
HCT
40
0.68%
PAL
39
0.67%
NCS
38
0.65%
ANS/LDOX
37
0.63%
RAS
36
0.61%
PYKS
33
0.56%
COMT
33
0.56%
BR6OX1/CYP85A1
32
0.55%
COR
30
0.51%
CPD/CYP90A1
28
0.48%
DFR
26
0.44%
LAMT
25
0.43%
CYP51G1
23
0.39%
CCR
22
0.38%
PMT
20
0.34%
ANR
19
0.32%
8HGO
18
0.31%
ROT3/CYP90C1
18
0.31%
16OMT
17
0.29%
CCoAOMT
16
0.27%
CYP719
15
0.26%
FPPS
15
0.26%
CNMT
13
0.22%
AACT
13
0.22%
GGPPS
12
0.2%
HPPR
10
0.17%
SQE
10
0.17%
MPO
9
0.15%
FLS
9
0.15%
DET2
9
0.15%
CYP80B1
8
0.14%
CPR
8
0.14%
SQS/FDFT1
8
0.14%
HMGR
8
0.14%
DXS
8
0.14%
ISY
7
0.12%
MVK
7
0.12%
TDC
6
0.1%
XMT_MXMT_DXMT
6
0.1%
CHI
6
0.1%
MVD
6
0.1%
DWF1
5
0.09%
CMK/IspE
5
0.09%
IDI
5
0.09%
HDS/IspG
5
0.09%
CHS
4
0.07%
SMO1/SMO2
4
0.07%
HYD1
4
0.07%
HMGS
4
0.07%
DXR
4
0.07%
CYP80F1
3
0.05%
ADC
3
0.05%
HDR/IspH
3
0.05%
MCT/IspD
3
0.05%
DWF5
2
0.03%
PMK
2
0.03%
6OMT_4OMT_SOMT
1
0.02%
TYDC_DDC
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
MDS/IspF
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 624 | 20 | UGT (263) | View species results |
| Alkaloid pathway | 524 | 24 | 7DLGT (112) | View species results |
| Phenylpropanoid pathway | 425 | 11 | POD (142) | View species results |
| Flavonoid pathway | 287 | 13 | UFGT (185) | View species results |
| Rosmarinic acid pathway | 164 | 7 | C4H (64) | View species results |
| Steroid pathway | 95 | 12 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2396 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 344 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| cinchona_pubescens_g52043.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g52045.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g52048.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g52055.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g52057.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g52059.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g52062.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g52069.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g52073.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g52143.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g52838.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g52839.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g52840.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g5317.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g5319.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g5324.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g5332.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g5333.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g5336.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g53533.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g53573.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g54284.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g54318.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g54329.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g54341.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g55264.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g55271.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g55902.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g55905.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g55927.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g55928.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g55929.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g55931.t1 | Rosmarinic Acid | C4H | medium | pass |
| cinchona_pubescens_g55972.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g55974.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56193.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56194.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56195.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56196.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56197.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56313.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56321.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56386.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56387.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56388.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g56621.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g57300.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g58078.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g58079.t1 | Rosmarinic Acid | C4H | low | borderline |
| cinchona_pubescens_g58080.t1 | Rosmarinic Acid | C4H | low | borderline |