PlantSME Plant secondary metabolism enzyme database

Cinchona pubescens (cinchona_pubescens)

Imported from atlas release summary for Cinchona pubescens.

2119
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.45% Alkaloid pathway 24.73% Phenylpropanoid pathway 20.06% Flavonoid pathway 13.54% Rosmarinic acid pathway 7.74% Steroid pathway 4.48%
Family Distribution
C4H 6.82% C3'H/CYP98A 5.56% UGT 5.15% BAHD 4.57% 7DLGT 4.49% CYP76 3.94% UFGT 3.92% IFS 3.33%
Other Families 62.22%
More Families (96)
4CL 174 2.97% POD 166 2.83% DWF4/CYP90B1 145 2.47% T3O 143 2.44% F3H 141 2.4% F3'H/CYP75B 137 2.34% BR6OX2/CYP85A2 122 2.08% NMT 111 1.89% CAD 108 1.84% SGD 105 1.79% CODM/T6ODM 100 1.71% STR 97 1.65% CYP71 87 1.48% T16H 84 1.43% H6H 81 1.38% GS 79 1.35% G8O/G8H 77 1.31% F5H/CYP84A 64 1.09% TPS 63 1.07% GES 60 1.02% IO 58 0.99% F3'5'H/CYP75A 56 0.96% SMT1/SMT2/SMT3 56 0.96% FNS 54 0.92% LAC 54 0.92% CSE 52 0.89% CAS 52 0.89% SLS 51 0.87% CYP90D1 49 0.84% 7DLH 44 0.75% TRI/TRII 44 0.75% TAT 44 0.75% BBE 43 0.73% IFR 42 0.72% HCT 40 0.68% PAL 39 0.67% NCS 38 0.65% ANS/LDOX 37 0.63% RAS 36 0.61% PYKS 33 0.56% COMT 33 0.56% BR6OX1/CYP85A1 32 0.55% COR 30 0.51% CPD/CYP90A1 28 0.48% DFR 26 0.44% LAMT 25 0.43% CYP51G1 23 0.39% CCR 22 0.38% PMT 20 0.34% ANR 19 0.32% 8HGO 18 0.31% ROT3/CYP90C1 18 0.31% 16OMT 17 0.29% CCoAOMT 16 0.27% CYP719 15 0.26% FPPS 15 0.26% CNMT 13 0.22% AACT 13 0.22% GGPPS 12 0.2% HPPR 10 0.17% SQE 10 0.17% MPO 9 0.15% FLS 9 0.15% DET2 9 0.15% CYP80B1 8 0.14% CPR 8 0.14% SQS/FDFT1 8 0.14% HMGR 8 0.14% DXS 8 0.14% ISY 7 0.12% MVK 7 0.12% TDC 6 0.1% XMT_MXMT_DXMT 6 0.1% CHI 6 0.1% MVD 6 0.1% DWF1 5 0.09% CMK/IspE 5 0.09% IDI 5 0.09% HDS/IspG 5 0.09% CHS 4 0.07% SMO1/SMO2 4 0.07% HYD1 4 0.07% HMGS 4 0.07% DXR 4 0.07% CYP80F1 3 0.05% ADC 3 0.05% HDR/IspH 3 0.05% MCT/IspD 3 0.05% DWF5 2 0.03% PMK 2 0.03% 6OMT_4OMT_SOMT 1 0.02% TYDC_DDC 1 0.02% CPI1 1 0.02% FK 1 0.02% MDS/IspF 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 624 20 UGT (263) View species results
Alkaloid pathway 524 24 7DLGT (112) View species results
Phenylpropanoid pathway 425 11 POD (142) View species results
Flavonoid pathway 287 13 UFGT (185) View species results
Rosmarinic acid pathway 164 7 C4H (64) View species results
Steroid pathway 95 12 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2396 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status Best Target
cinchona_pubescens_g59161.t1 Alkaloid GES medium pass GES__00005__sp_Q308N0_GRNL6_PERFR
cinchona_pubescens_g63364.t1 Alkaloid GES medium pass GES__00005__sp_Q308N0_GRNL6_PERFR
cinchona_pubescens_g66657.t1 Alkaloid GES medium pass GES__00011__sp_R9QMR5_ATERP_PINBN
cinchona_pubescens_g68650.t1 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
cinchona_pubescens_g68654.t1 Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH
cinchona_pubescens_g68655.t1 Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH
cinchona_pubescens_g68656.t1 Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH
cinchona_pubescens_g68658.t1 Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH
cinchona_pubescens_g69473.t1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
cinchona_pubescens_g70027.t1 Alkaloid GES low borderline GES__00008__sp_Q84ZW8_ACSS_MAIZE