Cinchona pubescens (cinchona_pubescens)
Imported from atlas release summary for Cinchona pubescens.
2119
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2119
Candidate Genes
C4H
6.82%
C3'H/CYP98A
5.56%
UGT
5.15%
BAHD
4.57%
7DLGT
4.49%
CYP76
3.94%
UFGT
3.92%
IFS
3.33%
Other Families
62.22%
More Families (96)
4CL
174
2.97%
POD
166
2.83%
DWF4/CYP90B1
145
2.47%
T3O
143
2.44%
F3H
141
2.4%
F3'H/CYP75B
137
2.34%
BR6OX2/CYP85A2
122
2.08%
NMT
111
1.89%
CAD
108
1.84%
SGD
105
1.79%
CODM/T6ODM
100
1.71%
STR
97
1.65%
CYP71
87
1.48%
T16H
84
1.43%
H6H
81
1.38%
GS
79
1.35%
G8O/G8H
77
1.31%
F5H/CYP84A
64
1.09%
TPS
63
1.07%
GES
60
1.02%
IO
58
0.99%
F3'5'H/CYP75A
56
0.96%
SMT1/SMT2/SMT3
56
0.96%
FNS
54
0.92%
LAC
54
0.92%
CSE
52
0.89%
CAS
52
0.89%
SLS
51
0.87%
CYP90D1
49
0.84%
7DLH
44
0.75%
TRI/TRII
44
0.75%
TAT
44
0.75%
BBE
43
0.73%
IFR
42
0.72%
HCT
40
0.68%
PAL
39
0.67%
NCS
38
0.65%
ANS/LDOX
37
0.63%
RAS
36
0.61%
PYKS
33
0.56%
COMT
33
0.56%
BR6OX1/CYP85A1
32
0.55%
COR
30
0.51%
CPD/CYP90A1
28
0.48%
DFR
26
0.44%
LAMT
25
0.43%
CYP51G1
23
0.39%
CCR
22
0.38%
PMT
20
0.34%
ANR
19
0.32%
8HGO
18
0.31%
ROT3/CYP90C1
18
0.31%
16OMT
17
0.29%
CCoAOMT
16
0.27%
CYP719
15
0.26%
FPPS
15
0.26%
CNMT
13
0.22%
AACT
13
0.22%
GGPPS
12
0.2%
HPPR
10
0.17%
SQE
10
0.17%
MPO
9
0.15%
FLS
9
0.15%
DET2
9
0.15%
CYP80B1
8
0.14%
CPR
8
0.14%
SQS/FDFT1
8
0.14%
HMGR
8
0.14%
DXS
8
0.14%
ISY
7
0.12%
MVK
7
0.12%
TDC
6
0.1%
XMT_MXMT_DXMT
6
0.1%
CHI
6
0.1%
MVD
6
0.1%
DWF1
5
0.09%
CMK/IspE
5
0.09%
IDI
5
0.09%
HDS/IspG
5
0.09%
CHS
4
0.07%
SMO1/SMO2
4
0.07%
HYD1
4
0.07%
HMGS
4
0.07%
DXR
4
0.07%
CYP80F1
3
0.05%
ADC
3
0.05%
HDR/IspH
3
0.05%
MCT/IspD
3
0.05%
DWF5
2
0.03%
PMK
2
0.03%
6OMT_4OMT_SOMT
1
0.02%
TYDC_DDC
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
MDS/IspF
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 624 | 20 | UGT (263) | View species results |
| Alkaloid pathway | 524 | 24 | 7DLGT (112) | View species results |
| Phenylpropanoid pathway | 425 | 11 | POD (142) | View species results |
| Flavonoid pathway | 287 | 13 | UFGT (185) | View species results |
| Rosmarinic acid pathway | 164 | 7 | C4H (64) | View species results |
| Steroid pathway | 95 | 12 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2396 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 344 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| cinchona_pubescens_g34663.t1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| cinchona_pubescens_g35339.t1 | Alkaloid | NMT | low | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| cinchona_pubescens_g35553.t1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| cinchona_pubescens_g36432.t1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| cinchona_pubescens_g36668.t1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| cinchona_pubescens_g36669.t1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| cinchona_pubescens_g3671.t1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| cinchona_pubescens_g37008.t1 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| cinchona_pubescens_g37072.t1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| cinchona_pubescens_g38129.t1 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| cinchona_pubescens_g38130.t1 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| cinchona_pubescens_g38131.t1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| cinchona_pubescens_g38380.t1 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| cinchona_pubescens_g38385.t1 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| cinchona_pubescens_g39618.t1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| cinchona_pubescens_g39803.t1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| cinchona_pubescens_g41688.t1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| cinchona_pubescens_g43064.t1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| cinchona_pubescens_g43744.t1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| cinchona_pubescens_g44084.t1 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| cinchona_pubescens_g46832.t1 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| cinchona_pubescens_g47325.t1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| cinchona_pubescens_g47907.t1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| cinchona_pubescens_g48371.t1 | Alkaloid | NMT | medium | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| cinchona_pubescens_g48470.t1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| cinchona_pubescens_g4923.t1 | Alkaloid | NMT | medium | borderline | NMT__00043__sp_Q8H0D2_DXMT1_COFAR |
| cinchona_pubescens_g50377.t1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| cinchona_pubescens_g50480.t1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| cinchona_pubescens_g50809.t1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| cinchona_pubescens_g50814.t1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| cinchona_pubescens_g50815.t1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| cinchona_pubescens_g51910.t1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| cinchona_pubescens_g52294.t1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| cinchona_pubescens_g52542.t1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| cinchona_pubescens_g53213.t1 | Alkaloid | NMT | low | borderline | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| cinchona_pubescens_g53214.t1 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| cinchona_pubescens_g53760.t1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| cinchona_pubescens_g55846.t1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| cinchona_pubescens_g57973.t1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| cinchona_pubescens_g57974.t1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| cinchona_pubescens_g58040.t1 | Alkaloid | NMT | medium | pass | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| cinchona_pubescens_g58827.t1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| cinchona_pubescens_g59088.t1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| cinchona_pubescens_g59090.t1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| cinchona_pubescens_g60661.t1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| cinchona_pubescens_g61399.t1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| cinchona_pubescens_g61609.t1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| cinchona_pubescens_g61808.t1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| cinchona_pubescens_g63106.t1 | Alkaloid | NMT | medium | pass | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| cinchona_pubescens_g63113.t1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |