Cinchona pubescens (cinchona_pubescens)
Imported from atlas release summary for Cinchona pubescens.
2119
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2119
Candidate Genes
C4H
6.82%
C3'H/CYP98A
5.56%
UGT
5.15%
BAHD
4.57%
7DLGT
4.49%
CYP76
3.94%
UFGT
3.92%
IFS
3.33%
Other Families
62.22%
More Families (96)
4CL
174
2.97%
POD
166
2.83%
DWF4/CYP90B1
145
2.47%
T3O
143
2.44%
F3H
141
2.4%
F3'H/CYP75B
137
2.34%
BR6OX2/CYP85A2
122
2.08%
NMT
111
1.89%
CAD
108
1.84%
SGD
105
1.79%
CODM/T6ODM
100
1.71%
STR
97
1.65%
CYP71
87
1.48%
T16H
84
1.43%
H6H
81
1.38%
GS
79
1.35%
G8O/G8H
77
1.31%
F5H/CYP84A
64
1.09%
TPS
63
1.07%
GES
60
1.02%
IO
58
0.99%
F3'5'H/CYP75A
56
0.96%
SMT1/SMT2/SMT3
56
0.96%
FNS
54
0.92%
LAC
54
0.92%
CSE
52
0.89%
CAS
52
0.89%
SLS
51
0.87%
CYP90D1
49
0.84%
7DLH
44
0.75%
TRI/TRII
44
0.75%
TAT
44
0.75%
BBE
43
0.73%
IFR
42
0.72%
HCT
40
0.68%
PAL
39
0.67%
NCS
38
0.65%
ANS/LDOX
37
0.63%
RAS
36
0.61%
PYKS
33
0.56%
COMT
33
0.56%
BR6OX1/CYP85A1
32
0.55%
COR
30
0.51%
CPD/CYP90A1
28
0.48%
DFR
26
0.44%
LAMT
25
0.43%
CYP51G1
23
0.39%
CCR
22
0.38%
PMT
20
0.34%
ANR
19
0.32%
8HGO
18
0.31%
ROT3/CYP90C1
18
0.31%
16OMT
17
0.29%
CCoAOMT
16
0.27%
CYP719
15
0.26%
FPPS
15
0.26%
CNMT
13
0.22%
AACT
13
0.22%
GGPPS
12
0.2%
HPPR
10
0.17%
SQE
10
0.17%
MPO
9
0.15%
FLS
9
0.15%
DET2
9
0.15%
CYP80B1
8
0.14%
CPR
8
0.14%
SQS/FDFT1
8
0.14%
HMGR
8
0.14%
DXS
8
0.14%
ISY
7
0.12%
MVK
7
0.12%
TDC
6
0.1%
XMT_MXMT_DXMT
6
0.1%
CHI
6
0.1%
MVD
6
0.1%
DWF1
5
0.09%
CMK/IspE
5
0.09%
IDI
5
0.09%
HDS/IspG
5
0.09%
CHS
4
0.07%
SMO1/SMO2
4
0.07%
HYD1
4
0.07%
HMGS
4
0.07%
DXR
4
0.07%
CYP80F1
3
0.05%
ADC
3
0.05%
HDR/IspH
3
0.05%
MCT/IspD
3
0.05%
DWF5
2
0.03%
PMK
2
0.03%
6OMT_4OMT_SOMT
1
0.02%
TYDC_DDC
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
MDS/IspF
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 624 | 20 | UGT (263) | View species results |
| Alkaloid pathway | 524 | 24 | 7DLGT (112) | View species results |
| Phenylpropanoid pathway | 425 | 11 | POD (142) | View species results |
| Flavonoid pathway | 287 | 13 | UFGT (185) | View species results |
| Rosmarinic acid pathway | 164 | 7 | C4H (64) | View species results |
| Steroid pathway | 95 | 12 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2396 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 344 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| cinchona_pubescens_g29975.t1 | Terpenoid | BAHD | medium | pass | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| cinchona_pubescens_g30047.t1 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| cinchona_pubescens_g30182.t1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| cinchona_pubescens_g30281.t1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| cinchona_pubescens_g30447.t1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| cinchona_pubescens_g30692.t1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| cinchona_pubescens_g30703.t1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| cinchona_pubescens_g30713.t1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| cinchona_pubescens_g30721.t1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| cinchona_pubescens_g30756.t1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| cinchona_pubescens_g30769.t1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| cinchona_pubescens_g30777.t1 | Terpenoid | BAHD | medium | pass | BAHD__00053__sp_Q8GXU8_LPAT1_ARATH |
| cinchona_pubescens_g31065.t1 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| cinchona_pubescens_g31070.t1 | Terpenoid | BAHD | low | borderline | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| cinchona_pubescens_g31071.t1 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| cinchona_pubescens_g31073.t1 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| cinchona_pubescens_g31858.t1 | Terpenoid | BAHD | medium | pass | BAHD__00078__sp_Q9LHS7_GPAT7_ARATH |
| cinchona_pubescens_g31943.t1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| cinchona_pubescens_g32413.t1 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| cinchona_pubescens_g34033.t1 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| cinchona_pubescens_g34034.t1 | Terpenoid | BAHD | low | borderline | BAHD__00087__sp_Q9M3B1_WSD6_ARATH |
| cinchona_pubescens_g34872.t1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| cinchona_pubescens_g3498.t1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| cinchona_pubescens_g35069.t1 | Terpenoid | BAHD | medium | pass | BAHD__00089__sp_Q9SB58_ZDH19_ARATH |
| cinchona_pubescens_g36503.t1 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| cinchona_pubescens_g37114.t1 | Terpenoid | BAHD | low | borderline | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| cinchona_pubescens_g37261.t1 | Terpenoid | BAHD | medium | pass | BAHD__00032__sp_P0DO84_AT_STRNX |
| cinchona_pubescens_g37262.t1 | Terpenoid | BAHD | low | borderline | BAHD__00033__sp_P0DXG0_AT_STRYX |
| cinchona_pubescens_g37780.t1 | Terpenoid | BAHD | medium | pass | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| cinchona_pubescens_g37836.t1 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| cinchona_pubescens_g3793.t1 | Terpenoid | BAHD | medium | pass | BAHD__00002__sp_A0A068BIF1_AT9_ACTER |
| cinchona_pubescens_g37981.t1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| cinchona_pubescens_g3806.t1 | Terpenoid | BAHD | low | borderline | BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF |
| cinchona_pubescens_g38091.t1 | Terpenoid | BAHD | medium | borderline | BAHD__00044__sp_Q56WD9_THIK2_ARATH |
| cinchona_pubescens_g3852.t1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| cinchona_pubescens_g39283.t1 | Terpenoid | BAHD | low | borderline | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| cinchona_pubescens_g39317.t1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| cinchona_pubescens_g39458.t1 | Terpenoid | BAHD | low | borderline | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| cinchona_pubescens_g39463.t1 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| cinchona_pubescens_g40353.t1 | Terpenoid | BAHD | medium | pass | BAHD__00062__sp_Q93V61_LCAT3_ARATH |
| cinchona_pubescens_g41110.t1 | Terpenoid | BAHD | low | borderline | BAHD__00002__sp_A0A068BIF1_AT9_ACTER |
| cinchona_pubescens_g41407.t1 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| cinchona_pubescens_g41556.t1 | Terpenoid | BAHD | medium | pass | BAHD__00097__sp_Q9ZV87_NAPES_ARATH |
| cinchona_pubescens_g41571.t1 | Terpenoid | BAHD | medium | pass | BAHD__00021__sp_K7K424_DAT2D_SOYBN |
| cinchona_pubescens_g41632.t1 | Terpenoid | BAHD | low | borderline | BAHD__00051__sp_Q7XA86_ZDH11_ARATH |
| cinchona_pubescens_g41739.t1 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| cinchona_pubescens_g41740.t1 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| cinchona_pubescens_g41979.t1 | Terpenoid | BAHD | medium | pass | BAHD__00027__sp_O80437_GPAT6_ARATH |
| cinchona_pubescens_g41980.t1 | Terpenoid | BAHD | medium | pass | BAHD__00027__sp_O80437_GPAT6_ARATH |
| cinchona_pubescens_g41985.t1 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |