Citrus limon (citrus_limon)
Imported from atlas release summary for Citrus limon.
3796
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3796
Candidate Genes
C4H
6.61%
C3'H/CYP98A
6.54%
BAHD
5.51%
CYP76
4.49%
IFS
4.07%
T3O
3.93%
UGT
3.47%
4CL
3.17%
Other Families
62.21%
More Families (97)
7DLGT
277
2.89%
F3H
275
2.87%
F3'H/CYP75B
275
2.87%
POD
274
2.86%
UFGT
271
2.83%
NMT
242
2.53%
DWF4/CYP90B1
227
2.37%
BR6OX2/CYP85A2
213
2.23%
CODM/T6ODM
198
2.07%
COMT
198
2.07%
STR
152
1.59%
CAS
150
1.57%
TPS
144
1.5%
GES
141
1.47%
CAD
131
1.37%
CYP71
121
1.26%
16OMT
119
1.24%
HCT
119
1.24%
CYP90D1
112
1.17%
TRI/TRII
110
1.15%
H6H
100
1.04%
SMT1/SMT2/SMT3
97
1.01%
G8O/G8H
95
0.99%
RAS
88
0.92%
TAT
88
0.92%
PYKS
77
0.8%
T16H
74
0.77%
IFR
74
0.77%
CSE
70
0.73%
F3'5'H/CYP75A
62
0.65%
SGD
60
0.63%
GS
58
0.61%
PMT
57
0.6%
7DLH
57
0.6%
IO
56
0.59%
LAC
53
0.55%
BBE
50
0.52%
CPD/CYP90A1
47
0.49%
LAMT
46
0.48%
FNS
46
0.48%
F5H/CYP84A
44
0.46%
ANR
42
0.44%
COR
40
0.42%
CCR
40
0.42%
CYP51G1
38
0.4%
ISY
37
0.39%
8HGO
37
0.39%
SLS
33
0.34%
CHS
32
0.33%
PAL
30
0.31%
NCS
29
0.3%
GGPPS
27
0.28%
ANS/LDOX
26
0.27%
MPO
22
0.23%
TYDC_DDC
21
0.22%
DFR
20
0.21%
CNMT
18
0.19%
CPR
17
0.18%
CYP719
16
0.17%
CCoAOMT
16
0.17%
BR6OX1/CYP85A1
16
0.17%
FPPS
16
0.17%
AACT
16
0.17%
SQE
15
0.16%
HPPR
14
0.15%
ROT3/CYP90C1
13
0.14%
XMT_MXMT_DXMT
12
0.13%
ODC
12
0.13%
SQS/FDFT1
12
0.13%
CYP80B1
11
0.11%
DXS
11
0.11%
MVK
10
0.1%
DXR
9
0.09%
CHI
8
0.08%
HYD1
8
0.08%
FLS
7
0.07%
HDR/IspH
7
0.07%
6OMT_4OMT_SOMT
6
0.06%
MVD
6
0.06%
GPPS
6
0.06%
SMO1/SMO2
4
0.04%
DWF7
4
0.04%
DET2
4
0.04%
CMK/IspE
4
0.04%
MCT/IspD
4
0.04%
HMGR
4
0.04%
HMGS
4
0.04%
HDS/IspG
4
0.04%
TDC
3
0.03%
ADC
2
0.02%
DWF5
2
0.02%
CPI1
2
0.02%
FK
2
0.02%
DWF1
2
0.02%
PMK
2
0.02%
MDS/IspF
2
0.02%
IDI
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1086 | 19 | BAHD (433) | View species results |
| Alkaloid pathway | 886 | 25 | 7DLGT (159) | View species results |
| Phenylpropanoid pathway | 771 | 11 | POD (258) | View species results |
| Flavonoid pathway | 425 | 12 | UFGT (253) | View species results |
| Rosmarinic acid pathway | 407 | 7 | C4H (173) | View species results |
| Steroid pathway | 221 | 12 | CAS (121) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 3965 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 734 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| citrus_limon_GWHPCBFQ002788.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ005700.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ006958.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ010689.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ016328.1 | Flavonoid | CHS | medium | pass | CHS__00002__sp_B0LDU5_PKS4_RUBID |
| citrus_limon_GWHPCBFQ016329.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ016330.1 | Flavonoid | CHS | medium | pass | CHS__00010__sp_Q9FEY5_CHSH1_HUMLU |
| citrus_limon_GWHPCBFQ016446.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ016481.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ016485.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ019998.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ019999.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ020121.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ020161.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ020162.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ020164.1 | Flavonoid | CHS | medium | pass | CHS__00011__sp_Q9FUB7_CHSY_HYPAN |
| citrus_limon_GWHPCBFQ020165.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ032822.1 | Flavonoid | CHS | low | borderline | CHS__00011__sp_Q9FUB7_CHSY_HYPAN |
| citrus_limon_GWHPCBFQ037873.1 | Flavonoid | CHS | medium | pass | CHS__00011__sp_Q9FUB7_CHSY_HYPAN |
| citrus_limon_GWHPCBFQ049659.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ051294.1 | Flavonoid | CHS | medium | pass | CHS__00011__sp_Q9FUB7_CHSY_HYPAN |
| citrus_limon_GWHPCBFQ051471.1 | Flavonoid | CHS | medium | pass | CHS__00011__sp_Q9FUB7_CHSY_HYPAN |
| citrus_limon_GWHPCBFQ051473.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ051475.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ051584.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ054341.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ054475.1 | Flavonoid | CHS | medium | pass | CHS__00011__sp_Q9FUB7_CHSY_HYPAN |
| citrus_limon_GWHPCBFQ054479.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ054487.1 | Flavonoid | CHS | medium | pass | CHS__00007__sp_Q8RVK9_CHS_CANSA |
| citrus_limon_GWHPCBFQ057770.1 | Flavonoid | CHS | medium | pass | CHS__00011__sp_Q9FUB7_CHSY_HYPAN |
| citrus_limon_GWHPCBFQ057771.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |
| citrus_limon_GWHPCBFQ060767.1 | Flavonoid | CHS | medium | pass | CHS__00001__sp_A0A2Z5QL08_CHS_RHODA |