PlantSME Plant secondary metabolism enzyme database

Citrus limon (citrus_limon)

Imported from atlas release summary for Citrus limon.

3796
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1086 19 BAHD (433) View species results
Alkaloid pathway 886 25 7DLGT (159) View species results
Phenylpropanoid pathway 771 11 POD (258) View species results
Flavonoid pathway 425 12 UFGT (253) View species results
Rosmarinic acid pathway 407 7 C4H (173) View species results
Steroid pathway 221 12 CAS (121) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 3965 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 734 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
citrus_limon_GWHPCBFQ003000.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ003001.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ005609.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ005893.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ005894.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ005895.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ006331.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ007543.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
citrus_limon_GWHPCBFQ008936.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ010125.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ011754.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
citrus_limon_GWHPCBFQ012787.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ016742.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ020401.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ031677.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
citrus_limon_GWHPCBFQ036735.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
citrus_limon_GWHPCBFQ045065.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ045066.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ045069.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ048189.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
citrus_limon_GWHPCBFQ048194.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO