PlantSME Plant secondary metabolism enzyme database

Citrus limon (citrus_limon)

Imported from atlas release summary for Citrus limon.

3796
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1086 19 BAHD (433) View species results
Alkaloid pathway 886 25 7DLGT (159) View species results
Phenylpropanoid pathway 771 11 POD (258) View species results
Flavonoid pathway 425 12 UFGT (253) View species results
Rosmarinic acid pathway 407 7 C4H (173) View species results
Steroid pathway 221 12 CAS (121) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 3965 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 734 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
citrus_limon_GWHPCBFQ000854.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ003871.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ009590.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ009809.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ011852.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ013438.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ021964.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ021965.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ023864.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ023866.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ025135.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ025137.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ027272.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ030280.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ031307.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
citrus_limon_GWHPCBFQ036392.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
citrus_limon_GWHPCBFQ038289.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
citrus_limon_GWHPCBFQ039042.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ045517.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ045519.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ048880.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
citrus_limon_GWHPCBFQ056712.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
citrus_limon_GWHPCBFQ056719.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
citrus_limon_GWHPCBFQ056725.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
citrus_limon_GWHPCBFQ056923.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
citrus_limon_GWHPCBFQ059736.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
citrus_limon_GWHPCBFQ059740.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
citrus_limon_GWHPCBFQ059750.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
citrus_limon_GWHPCBFQ059943.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO