PlantSME Plant secondary metabolism enzyme database

Citrus limon (citrus_limon)

Imported from atlas release summary for Citrus limon.

3796
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.61% Alkaloid pathway 23.34% Phenylpropanoid pathway 20.31% Flavonoid pathway 11.2% Rosmarinic acid pathway 10.72% Steroid pathway 5.82%
Family Distribution
C4H 6.61% C3'H/CYP98A 6.54% BAHD 5.51% CYP76 4.49% IFS 4.07% T3O 3.93% UGT 3.47% 4CL 3.17%
Other Families 62.21%
More Families (97)
7DLGT 277 2.89% F3H 275 2.87% F3'H/CYP75B 275 2.87% POD 274 2.86% UFGT 271 2.83% NMT 242 2.53% DWF4/CYP90B1 227 2.37% BR6OX2/CYP85A2 213 2.23% CODM/T6ODM 198 2.07% COMT 198 2.07% STR 152 1.59% CAS 150 1.57% TPS 144 1.5% GES 141 1.47% CAD 131 1.37% CYP71 121 1.26% 16OMT 119 1.24% HCT 119 1.24% CYP90D1 112 1.17% TRI/TRII 110 1.15% H6H 100 1.04% SMT1/SMT2/SMT3 97 1.01% G8O/G8H 95 0.99% RAS 88 0.92% TAT 88 0.92% PYKS 77 0.8% T16H 74 0.77% IFR 74 0.77% CSE 70 0.73% F3'5'H/CYP75A 62 0.65% SGD 60 0.63% GS 58 0.61% PMT 57 0.6% 7DLH 57 0.6% IO 56 0.59% LAC 53 0.55% BBE 50 0.52% CPD/CYP90A1 47 0.49% LAMT 46 0.48% FNS 46 0.48% F5H/CYP84A 44 0.46% ANR 42 0.44% COR 40 0.42% CCR 40 0.42% CYP51G1 38 0.4% ISY 37 0.39% 8HGO 37 0.39% SLS 33 0.34% CHS 32 0.33% PAL 30 0.31% NCS 29 0.3% GGPPS 27 0.28% ANS/LDOX 26 0.27% MPO 22 0.23% TYDC_DDC 21 0.22% DFR 20 0.21% CNMT 18 0.19% CPR 17 0.18% CYP719 16 0.17% CCoAOMT 16 0.17% BR6OX1/CYP85A1 16 0.17% FPPS 16 0.17% AACT 16 0.17% SQE 15 0.16% HPPR 14 0.15% ROT3/CYP90C1 13 0.14% XMT_MXMT_DXMT 12 0.13% ODC 12 0.13% SQS/FDFT1 12 0.13% CYP80B1 11 0.11% DXS 11 0.11% MVK 10 0.1% DXR 9 0.09% CHI 8 0.08% HYD1 8 0.08% FLS 7 0.07% HDR/IspH 7 0.07% 6OMT_4OMT_SOMT 6 0.06% MVD 6 0.06% GPPS 6 0.06% SMO1/SMO2 4 0.04% DWF7 4 0.04% DET2 4 0.04% CMK/IspE 4 0.04% MCT/IspD 4 0.04% HMGR 4 0.04% HMGS 4 0.04% HDS/IspG 4 0.04% TDC 3 0.03% ADC 2 0.02% DWF5 2 0.02% CPI1 2 0.02% FK 2 0.02% DWF1 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% IDI 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1086 19 BAHD (433) View species results
Alkaloid pathway 886 25 7DLGT (159) View species results
Phenylpropanoid pathway 771 11 POD (258) View species results
Flavonoid pathway 425 12 UFGT (253) View species results
Rosmarinic acid pathway 407 7 C4H (173) View species results
Steroid pathway 221 12 CAS (121) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 3965 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 734 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
citrus_limon_GWHPCBFQ056301.1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
citrus_limon_GWHPCBFQ056303.1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
citrus_limon_GWHPCBFQ056304.1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
citrus_limon_GWHPCBFQ056305.1 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
citrus_limon_GWHPCBFQ056306.1 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
citrus_limon_GWHPCBFQ056307.1 Alkaloid TRI/TRII medium pass TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
citrus_limon_GWHPCBFQ056308.1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
citrus_limon_GWHPCBFQ056309.1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
citrus_limon_GWHPCBFQ059473.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
citrus_limon_GWHPCBFQ062591.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB