Citrus limon (citrus_limon)
Imported from atlas release summary for Citrus limon.
4339
Candidate Protein Records
3796
Pathway-Level Records
9572
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
9572
Family-Level Calls
C4H
6.61%
C3'H/CYP98A
6.54%
BAHD
5.51%
CYP76
4.49%
IFS
4.07%
T3O
3.93%
UGT
3.47%
4CL
3.17%
Other Families
62.21%
More Families (97)
7DLGT
277
2.89%
F3H
275
2.87%
F3'H/CYP75B
275
2.87%
POD
274
2.86%
UFGT
271
2.83%
NMT
242
2.53%
DWF4/CYP90B1
227
2.37%
BR6OX2/CYP85A2
213
2.23%
CODM/T6ODM
198
2.07%
COMT
198
2.07%
STR
152
1.59%
CAS
150
1.57%
TPS
144
1.5%
GES
141
1.47%
CAD
131
1.37%
CYP71
121
1.26%
16OMT
119
1.24%
HCT
119
1.24%
CYP90D1
112
1.17%
TRI/TRII
110
1.15%
H6H
100
1.04%
SMT1/SMT2/SMT3
97
1.01%
G8O/G8H
95
0.99%
RAS
88
0.92%
TAT
88
0.92%
PYKS
77
0.8%
T16H
74
0.77%
IFR
74
0.77%
CSE
70
0.73%
F3'5'H/CYP75A
62
0.65%
SGD
60
0.63%
GS
58
0.61%
PMT
57
0.6%
7DLH
57
0.6%
IO
56
0.59%
LAC
53
0.55%
BBE
50
0.52%
CPD/CYP90A1
47
0.49%
LAMT
46
0.48%
FNS
46
0.48%
F5H/CYP84A
44
0.46%
ANR
42
0.44%
COR
40
0.42%
CCR
40
0.42%
CYP51G1
38
0.4%
ISY
37
0.39%
8HGO
37
0.39%
SLS
33
0.34%
CHS
32
0.33%
PAL
30
0.31%
NCS
29
0.3%
GGPPS
27
0.28%
ANS/LDOX
26
0.27%
MPO
22
0.23%
TYDC_DDC
21
0.22%
DFR
20
0.21%
CNMT
18
0.19%
CPR
17
0.18%
CYP719
16
0.17%
CCoAOMT
16
0.17%
BR6OX1/CYP85A1
16
0.17%
FPPS
16
0.17%
AACT
16
0.17%
SQE
15
0.16%
HPPR
14
0.15%
ROT3/CYP90C1
13
0.14%
XMT_MXMT_DXMT
12
0.13%
ODC
12
0.13%
SQS/FDFT1
12
0.13%
CYP80B1
11
0.11%
DXS
11
0.11%
MVK
10
0.1%
DXR
9
0.09%
CHI
8
0.08%
HYD1
8
0.08%
FLS
7
0.07%
HDR/IspH
7
0.07%
6OMT_4OMT_SOMT
6
0.06%
MVD
6
0.06%
GPPS
6
0.06%
SMO1/SMO2
4
0.04%
DWF7
4
0.04%
DET2
4
0.04%
CMK/IspE
4
0.04%
MCT/IspD
4
0.04%
HMGR
4
0.04%
HMGS
4
0.04%
HDS/IspG
4
0.04%
TDC
3
0.03%
ADC
2
0.02%
DWF5
2
0.02%
CPI1
2
0.02%
FK
2
0.02%
DWF1
2
0.02%
PMK
2
0.02%
MDS/IspF
2
0.02%
IDI
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1086 | 19 | BAHD (433) | View species results |
| Alkaloid pathway | 886 | 25 | 7DLGT (159) | View species results |
| Phenylpropanoid pathway | 771 | 11 | POD (258) | View species results |
| Flavonoid pathway | 425 | 12 | UFGT (253) | View species results |
| Rosmarinic acid pathway | 407 | 7 | C4H (173) | View species results |
| Steroid pathway | 221 | 12 | CAS (121) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 3965 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 734 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| citrus_limon_GWHPCBFQ057333.1 | Alkaloid | H6H | medium | pass |
| citrus_limon_GWHPCBFQ057334.1 | Alkaloid | H6H | high | pass |
| citrus_limon_GWHPCBFQ057336.1 | Alkaloid | H6H | low | borderline |
| citrus_limon_GWHPCBFQ057337.1 | Alkaloid | H6H | low | borderline |
| citrus_limon_GWHPCBFQ057341.1 | Alkaloid | H6H | high | pass |
| citrus_limon_GWHPCBFQ057611.1 | Alkaloid | H6H | low | borderline |
| citrus_limon_GWHPCBFQ057618.1 | Alkaloid | H6H | medium | borderline |
| citrus_limon_GWHPCBFQ057627.1 | Alkaloid | H6H | low | borderline |
| citrus_limon_GWHPCBFQ057637.1 | Alkaloid | H6H | low | borderline |
| citrus_limon_GWHPCBFQ057642.1 | Alkaloid | H6H | medium | borderline |
| citrus_limon_GWHPCBFQ058896.1 | Alkaloid | H6H | low | borderline |
| citrus_limon_GWHPCBFQ058960.1 | Alkaloid | H6H | medium | borderline |
| citrus_limon_GWHPCBFQ058969.1 | Alkaloid | H6H | low | borderline |
| citrus_limon_GWHPCBFQ058975.1 | Alkaloid | H6H | medium | borderline |
| citrus_limon_GWHPCBFQ059622.1 | Alkaloid | H6H | low | borderline |
| citrus_limon_GWHPCBFQ059858.1 | Alkaloid | H6H | medium | borderline |
| citrus_limon_GWHPCBFQ060357.1 | Alkaloid | H6H | medium | borderline |
| citrus_limon_GWHPCBFQ060358.1 | Alkaloid | H6H | medium | pass |
| citrus_limon_GWHPCBFQ060359.1 | Alkaloid | H6H | low | borderline |
| citrus_limon_GWHPCBFQ060362.1 | Alkaloid | H6H | high | pass |
| citrus_limon_GWHPCBFQ060632.1 | Alkaloid | H6H | medium | pass |
| citrus_limon_GWHPCBFQ060633.1 | Alkaloid | H6H | high | pass |
| citrus_limon_GWHPCBFQ060875.1 | Alkaloid | H6H | medium | borderline |
| citrus_limon_GWHPCBFQ062021.1 | Alkaloid | H6H | low | borderline |
| citrus_limon_GWHPCBFQ062084.1 | Alkaloid | H6H | medium | borderline |
| citrus_limon_GWHPCBFQ001768.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ002848.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ003338.1 | Alkaloid | IO | low | borderline |
| citrus_limon_GWHPCBFQ004819.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ004899.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ004918.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ004930.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ006703.1 | Alkaloid | IO | low | borderline |
| citrus_limon_GWHPCBFQ007757.1 | Alkaloid | IO | low | borderline |
| citrus_limon_GWHPCBFQ010457.1 | Alkaloid | IO | low | borderline |
| citrus_limon_GWHPCBFQ015070.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ016661.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ018697.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ018701.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ020323.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ023746.1 | Alkaloid | IO | low | borderline |
| citrus_limon_GWHPCBFQ025328.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ030032.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ032424.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ033900.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ035328.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ037473.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ040002.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ040003.1 | Alkaloid | IO | medium | borderline |
| citrus_limon_GWHPCBFQ040004.1 | Alkaloid | IO | medium | borderline |