Corchorus capsularis (corchorus_capsularis)
Imported from atlas release summary for Corchorus capsularis.
1343
Candidate Protein Records
1051
Pathway-Level Records
2563
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2563
Family-Level Calls
BAHD
5.77%
C4H
5.27%
C3'H/CYP98A
4.72%
POD
4.45%
UGT
4.37%
4CL
4.21%
CYP76
3.67%
7DLGT
3.32%
Other Families
64.22%
More Families (97)
UFGT
85
3.32%
NMT
84
3.28%
IFS
76
2.97%
T3O
70
2.73%
F3H
63
2.46%
DWF4/CYP90B1
58
2.26%
CAD
54
2.11%
H6H
44
1.72%
CAS
44
1.72%
F3'H/CYP75B
41
1.6%
GES
36
1.4%
SMT1/SMT2/SMT3
35
1.37%
BR6OX2/CYP85A2
35
1.37%
TPS
35
1.37%
PYKS
34
1.33%
IFR
34
1.33%
GS
33
1.29%
STR
32
1.25%
CODM/T6ODM
32
1.25%
ANR
29
1.13%
LAC
25
0.98%
CYP71
24
0.94%
COMT
23
0.9%
HCT
22
0.86%
CCR
21
0.82%
TAT
21
0.82%
RAS
21
0.82%
IO
20
0.78%
FNS
19
0.74%
TRI/TRII
18
0.7%
T16H
18
0.7%
CSE
18
0.7%
G8O/G8H
17
0.66%
8HGO
17
0.66%
PMT
17
0.66%
NCS
17
0.66%
BR6OX1/CYP85A1
17
0.66%
DFR
16
0.62%
SLS
14
0.55%
7DLH
14
0.55%
CHS
14
0.55%
F3'5'H/CYP75A
14
0.55%
CYP90D1
14
0.55%
FPPS
14
0.55%
16OMT
13
0.51%
PAL
12
0.47%
ANS/LDOX
12
0.47%
F5H/CYP84A
12
0.47%
LAMT
11
0.43%
MPO
11
0.43%
CNMT
10
0.39%
COR
9
0.35%
CPR
9
0.35%
ISY
8
0.31%
SGD
8
0.31%
HPPR
8
0.31%
ROT3/CYP90C1
8
0.31%
CYP80B1
7
0.27%
CCoAOMT
7
0.27%
TYDC_DDC
6
0.23%
SQS/FDFT1
6
0.23%
CPD/CYP90A1
6
0.23%
DET2
6
0.23%
AACT
6
0.23%
CYP719
5
0.2%
CYP51G1
5
0.2%
GGPPS
5
0.2%
ODC
4
0.16%
FLS
4
0.16%
SMO1/SMO2
4
0.16%
HYD1
4
0.16%
DXS
4
0.16%
HMGS
4
0.16%
6OMT_4OMT_SOMT
3
0.12%
CHI
3
0.12%
MVK
3
0.12%
MVD
3
0.12%
HDS/IspG
3
0.12%
TDC
2
0.08%
ADC
2
0.08%
BBE
2
0.08%
FK
2
0.08%
DWF5
2
0.08%
DWF7
2
0.08%
SQE
2
0.08%
HMGR
2
0.08%
DXR
2
0.08%
XMT_MXMT_DXMT
1
0.04%
DWF1
1
0.04%
CPI1
1
0.04%
PMK
1
0.04%
MDS/IspF
1
0.04%
IDI
1
0.04%
MCT/IspD
1
0.04%
HDR/IspH
1
0.04%
GPPS
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 303 | 18 | BAHD (113) | View species results |
| Alkaloid pathway | 241 | 22 | NMT (42) | View species results |
| Phenylpropanoid pathway | 223 | 12 | POD (99) | View species results |
| Flavonoid pathway | 140 | 11 | UFGT (74) | View species results |
| Rosmarinic acid pathway | 83 | 7 | 4CL (25) | View species results |
| Steroid pathway | 61 | 9 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 825 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 191 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccapcontig143740243330.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Ccapcontig145970255710.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Ccapcontig150630265460.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Ccapcontig151170266690.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Ccapcontig151850269470.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Ccapcontig154350274520.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Ccapcontig157130279190.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Ccapcontig157150279220.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |