Corchorus capsularis (corchorus_capsularis)
Imported from atlas release summary for Corchorus capsularis.
1051
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1051
Candidate Genes
BAHD
5.77%
C4H
5.27%
C3'H/CYP98A
4.72%
POD
4.45%
UGT
4.37%
4CL
4.21%
CYP76
3.67%
7DLGT
3.32%
Other Families
64.22%
More Families (97)
UFGT
85
3.32%
NMT
84
3.28%
IFS
76
2.97%
T3O
70
2.73%
F3H
63
2.46%
DWF4/CYP90B1
58
2.26%
CAD
54
2.11%
H6H
44
1.72%
CAS
44
1.72%
F3'H/CYP75B
41
1.6%
GES
36
1.4%
SMT1/SMT2/SMT3
35
1.37%
BR6OX2/CYP85A2
35
1.37%
TPS
35
1.37%
PYKS
34
1.33%
IFR
34
1.33%
GS
33
1.29%
STR
32
1.25%
CODM/T6ODM
32
1.25%
ANR
29
1.13%
LAC
25
0.98%
CYP71
24
0.94%
COMT
23
0.9%
HCT
22
0.86%
CCR
21
0.82%
TAT
21
0.82%
RAS
21
0.82%
IO
20
0.78%
FNS
19
0.74%
TRI/TRII
18
0.7%
T16H
18
0.7%
CSE
18
0.7%
G8O/G8H
17
0.66%
8HGO
17
0.66%
PMT
17
0.66%
NCS
17
0.66%
BR6OX1/CYP85A1
17
0.66%
DFR
16
0.62%
SLS
14
0.55%
7DLH
14
0.55%
CHS
14
0.55%
F3'5'H/CYP75A
14
0.55%
CYP90D1
14
0.55%
FPPS
14
0.55%
16OMT
13
0.51%
PAL
12
0.47%
ANS/LDOX
12
0.47%
F5H/CYP84A
12
0.47%
LAMT
11
0.43%
MPO
11
0.43%
CNMT
10
0.39%
COR
9
0.35%
CPR
9
0.35%
ISY
8
0.31%
SGD
8
0.31%
HPPR
8
0.31%
ROT3/CYP90C1
8
0.31%
CYP80B1
7
0.27%
CCoAOMT
7
0.27%
TYDC_DDC
6
0.23%
SQS/FDFT1
6
0.23%
CPD/CYP90A1
6
0.23%
DET2
6
0.23%
AACT
6
0.23%
CYP719
5
0.2%
CYP51G1
5
0.2%
GGPPS
5
0.2%
ODC
4
0.16%
FLS
4
0.16%
SMO1/SMO2
4
0.16%
HYD1
4
0.16%
DXS
4
0.16%
HMGS
4
0.16%
6OMT_4OMT_SOMT
3
0.12%
CHI
3
0.12%
MVK
3
0.12%
MVD
3
0.12%
HDS/IspG
3
0.12%
TDC
2
0.08%
ADC
2
0.08%
BBE
2
0.08%
FK
2
0.08%
DWF5
2
0.08%
DWF7
2
0.08%
SQE
2
0.08%
HMGR
2
0.08%
DXR
2
0.08%
XMT_MXMT_DXMT
1
0.04%
DWF1
1
0.04%
CPI1
1
0.04%
PMK
1
0.04%
MDS/IspF
1
0.04%
IDI
1
0.04%
MCT/IspD
1
0.04%
HDR/IspH
1
0.04%
GPPS
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 303 | 18 | BAHD (113) | View species results |
| Alkaloid pathway | 241 | 22 | NMT (42) | View species results |
| Phenylpropanoid pathway | 223 | 12 | POD (99) | View species results |
| Flavonoid pathway | 140 | 11 | UFGT (74) | View species results |
| Rosmarinic acid pathway | 83 | 7 | 4CL (25) | View species results |
| Steroid pathway | 61 | 9 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 825 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 191 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccapcontig012750004740.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccapcontig064610028240.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Ccapcontig069130034990.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccapcontig074220044540.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccapcontig096060094480.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccapcontig100380111830.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccapcontig108610144050.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccapcontig108610144060.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccapcontig111600159620.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccapcontig131510213610.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccapcontig132560215120.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccapcontig132570215150.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccapcontig132820216200.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Ccapcontig132820216210.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Ccapcontig135540223370.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccapcontig135540223380.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccapcontig135550223400.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccapcontig137220228460.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |