PlantSME Plant secondary metabolism enzyme database

Corchorus capsularis (corchorus_capsularis)

Imported from atlas release summary for Corchorus capsularis.

1051
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.83% Alkaloid pathway 22.93% Phenylpropanoid pathway 21.22% Flavonoid pathway 13.32% Rosmarinic acid pathway 7.9% Steroid pathway 5.8%
Family Distribution
BAHD 5.77% C4H 5.27% C3'H/CYP98A 4.72% POD 4.45% UGT 4.37% 4CL 4.21% CYP76 3.67% 7DLGT 3.32%
Other Families 64.22%
More Families (97)
UFGT 85 3.32% NMT 84 3.28% IFS 76 2.97% T3O 70 2.73% F3H 63 2.46% DWF4/CYP90B1 58 2.26% CAD 54 2.11% H6H 44 1.72% CAS 44 1.72% F3'H/CYP75B 41 1.6% GES 36 1.4% SMT1/SMT2/SMT3 35 1.37% BR6OX2/CYP85A2 35 1.37% TPS 35 1.37% PYKS 34 1.33% IFR 34 1.33% GS 33 1.29% STR 32 1.25% CODM/T6ODM 32 1.25% ANR 29 1.13% LAC 25 0.98% CYP71 24 0.94% COMT 23 0.9% HCT 22 0.86% CCR 21 0.82% TAT 21 0.82% RAS 21 0.82% IO 20 0.78% FNS 19 0.74% TRI/TRII 18 0.7% T16H 18 0.7% CSE 18 0.7% G8O/G8H 17 0.66% 8HGO 17 0.66% PMT 17 0.66% NCS 17 0.66% BR6OX1/CYP85A1 17 0.66% DFR 16 0.62% SLS 14 0.55% 7DLH 14 0.55% CHS 14 0.55% F3'5'H/CYP75A 14 0.55% CYP90D1 14 0.55% FPPS 14 0.55% 16OMT 13 0.51% PAL 12 0.47% ANS/LDOX 12 0.47% F5H/CYP84A 12 0.47% LAMT 11 0.43% MPO 11 0.43% CNMT 10 0.39% COR 9 0.35% CPR 9 0.35% ISY 8 0.31% SGD 8 0.31% HPPR 8 0.31% ROT3/CYP90C1 8 0.31% CYP80B1 7 0.27% CCoAOMT 7 0.27% TYDC_DDC 6 0.23% SQS/FDFT1 6 0.23% CPD/CYP90A1 6 0.23% DET2 6 0.23% AACT 6 0.23% CYP719 5 0.2% CYP51G1 5 0.2% GGPPS 5 0.2% ODC 4 0.16% FLS 4 0.16% SMO1/SMO2 4 0.16% HYD1 4 0.16% DXS 4 0.16% HMGS 4 0.16% 6OMT_4OMT_SOMT 3 0.12% CHI 3 0.12% MVK 3 0.12% MVD 3 0.12% HDS/IspG 3 0.12% TDC 2 0.08% ADC 2 0.08% BBE 2 0.08% FK 2 0.08% DWF5 2 0.08% DWF7 2 0.08% SQE 2 0.08% HMGR 2 0.08% DXR 2 0.08% XMT_MXMT_DXMT 1 0.04% DWF1 1 0.04% CPI1 1 0.04% PMK 1 0.04% MDS/IspF 1 0.04% IDI 1 0.04% MCT/IspD 1 0.04% HDR/IspH 1 0.04% GPPS 1 0.04% CMK/IspE 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 303 18 BAHD (113) View species results
Alkaloid pathway 241 22 NMT (42) View species results
Phenylpropanoid pathway 223 12 POD (99) View species results
Flavonoid pathway 140 11 UFGT (74) View species results
Rosmarinic acid pathway 83 7 4CL (25) View species results
Steroid pathway 61 9 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 825 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 191 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ODC
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Gene Pathway Family Confidence Status Best Target
Ccapcontig069590035820.1 Alkaloid ODC medium pass ODC__00003__sp_P93351_ODC1B_TOBAC
Ccapcontig092480085090.1 Alkaloid ODC medium pass ODC__00003__sp_P93351_ODC1B_TOBAC
Ccapcontig147070257590.1 Alkaloid ODC medium pass ODC__00003__sp_P93351_ODC1B_TOBAC
Ccapcontig147070257600.1 Alkaloid ODC medium pass ODC__00001__sp_A0A1S4AUX8_ODC1A_TOBAC