PlantSME Plant secondary metabolism enzyme database

Corchorus capsularis (corchorus_capsularis)

Imported from atlas release summary for Corchorus capsularis.

1051
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 303 18 BAHD (113) View species results
Alkaloid pathway 241 22 NMT (42) View species results
Phenylpropanoid pathway 223 12 POD (99) View species results
Flavonoid pathway 140 11 UFGT (74) View species results
Rosmarinic acid pathway 83 7 4CL (25) View species results
Steroid pathway 61 9 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 825 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 191 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Ccapcontig012980004860.1 Rosmarinic Acid 4CL medium pass
Ccapcontig050220015010.1 Rosmarinic Acid 4CL low borderline
Ccapcontig056200019350.1 Rosmarinic Acid 4CL medium pass
Ccapcontig061580024090.1 Rosmarinic Acid 4CL medium pass
Ccapcontig061580024100.1 Rosmarinic Acid 4CL medium pass
Ccapcontig071660039710.1 Rosmarinic Acid 4CL low borderline
Ccapcontig072250041210.1 Rosmarinic Acid 4CL medium pass
Ccapcontig072400041750.1 Rosmarinic Acid 4CL medium pass
Ccapcontig085140069570.1 Rosmarinic Acid 4CL medium pass
Ccapcontig091710081390.1 Rosmarinic Acid 4CL medium pass
Ccapcontig092640085390.1 Rosmarinic Acid 4CL medium pass
Ccapcontig094850089460.1 Rosmarinic Acid 4CL medium pass
Ccapcontig094920089530.1 Rosmarinic Acid 4CL medium pass
Ccapcontig098060103150.1 Rosmarinic Acid 4CL medium pass
Ccapcontig099710110030.1 Rosmarinic Acid 4CL medium pass
Ccapcontig099710110040.1 Rosmarinic Acid 4CL medium pass
Ccapcontig103800126120.1 Rosmarinic Acid 4CL low borderline
Ccapcontig104090127830.1 Rosmarinic Acid 4CL medium pass
Ccapcontig110560152830.1 Rosmarinic Acid 4CL low borderline
Ccapcontig114470167950.1 Rosmarinic Acid 4CL medium pass
Ccapcontig118150177740.1 Rosmarinic Acid 4CL medium pass
Ccapcontig128710208490.1 Rosmarinic Acid 4CL low borderline
Ccapcontig132490214920.1 Rosmarinic Acid 4CL low borderline
Ccapcontig135570223590.1 Rosmarinic Acid 4CL low borderline
Ccapcontig137140227720.1 Rosmarinic Acid 4CL medium pass
Ccapcontig137210228320.1 Rosmarinic Acid 4CL medium pass
Ccapcontig138680232420.1 Rosmarinic Acid 4CL medium pass
Ccapcontig139350234230.1 Rosmarinic Acid 4CL low borderline
Ccapcontig143740243330.1 Rosmarinic Acid 4CL medium pass
Ccapcontig145970255710.1 Rosmarinic Acid 4CL medium pass
Ccapcontig150630265460.1 Rosmarinic Acid 4CL low borderline
Ccapcontig151170266690.1 Rosmarinic Acid 4CL medium pass
Ccapcontig151850269470.1 Rosmarinic Acid 4CL medium pass
Ccapcontig154350274520.1 Rosmarinic Acid 4CL medium pass
Ccapcontig157130279190.1 Rosmarinic Acid 4CL low borderline
Ccapcontig157150279220.1 Rosmarinic Acid 4CL low borderline
Ccapcontig005540001590.1 Rosmarinic Acid C4H low borderline
Ccapcontig011830004240.1 Rosmarinic Acid C4H low borderline
Ccapcontig050880015780.1 Rosmarinic Acid C4H low borderline
Ccapcontig059980020940.1 Rosmarinic Acid C4H low borderline
Ccapcontig061040022630.1 Rosmarinic Acid C4H medium pass
Ccapcontig061760024500.1 Rosmarinic Acid C4H low borderline
Ccapcontig061760024520.1 Rosmarinic Acid C4H low borderline
Ccapcontig062980026320.1 Rosmarinic Acid C4H medium pass
Ccapcontig062990026340.1 Rosmarinic Acid C4H low borderline
Ccapcontig065290028720.1 Rosmarinic Acid C4H low borderline
Ccapcontig065580029070.1 Rosmarinic Acid C4H medium pass
Ccapcontig067050031000.1 Rosmarinic Acid C4H low borderline
Ccapcontig068730034100.1 Rosmarinic Acid C4H low borderline
Ccapcontig068910034480.1 Rosmarinic Acid C4H low borderline