Corchorus capsularis (corchorus_capsularis)
Imported from atlas release summary for Corchorus capsularis.
1051
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1051
Candidate Genes
BAHD
5.77%
C4H
5.27%
C3'H/CYP98A
4.72%
POD
4.45%
UGT
4.37%
4CL
4.21%
CYP76
3.67%
7DLGT
3.32%
Other Families
64.22%
More Families (97)
UFGT
85
3.32%
NMT
84
3.28%
IFS
76
2.97%
T3O
70
2.73%
F3H
63
2.46%
DWF4/CYP90B1
58
2.26%
CAD
54
2.11%
H6H
44
1.72%
CAS
44
1.72%
F3'H/CYP75B
41
1.6%
GES
36
1.4%
SMT1/SMT2/SMT3
35
1.37%
BR6OX2/CYP85A2
35
1.37%
TPS
35
1.37%
PYKS
34
1.33%
IFR
34
1.33%
GS
33
1.29%
STR
32
1.25%
CODM/T6ODM
32
1.25%
ANR
29
1.13%
LAC
25
0.98%
CYP71
24
0.94%
COMT
23
0.9%
HCT
22
0.86%
CCR
21
0.82%
TAT
21
0.82%
RAS
21
0.82%
IO
20
0.78%
FNS
19
0.74%
TRI/TRII
18
0.7%
T16H
18
0.7%
CSE
18
0.7%
G8O/G8H
17
0.66%
8HGO
17
0.66%
PMT
17
0.66%
NCS
17
0.66%
BR6OX1/CYP85A1
17
0.66%
DFR
16
0.62%
SLS
14
0.55%
7DLH
14
0.55%
CHS
14
0.55%
F3'5'H/CYP75A
14
0.55%
CYP90D1
14
0.55%
FPPS
14
0.55%
16OMT
13
0.51%
PAL
12
0.47%
ANS/LDOX
12
0.47%
F5H/CYP84A
12
0.47%
LAMT
11
0.43%
MPO
11
0.43%
CNMT
10
0.39%
COR
9
0.35%
CPR
9
0.35%
ISY
8
0.31%
SGD
8
0.31%
HPPR
8
0.31%
ROT3/CYP90C1
8
0.31%
CYP80B1
7
0.27%
CCoAOMT
7
0.27%
TYDC_DDC
6
0.23%
SQS/FDFT1
6
0.23%
CPD/CYP90A1
6
0.23%
DET2
6
0.23%
AACT
6
0.23%
CYP719
5
0.2%
CYP51G1
5
0.2%
GGPPS
5
0.2%
ODC
4
0.16%
FLS
4
0.16%
SMO1/SMO2
4
0.16%
HYD1
4
0.16%
DXS
4
0.16%
HMGS
4
0.16%
6OMT_4OMT_SOMT
3
0.12%
CHI
3
0.12%
MVK
3
0.12%
MVD
3
0.12%
HDS/IspG
3
0.12%
TDC
2
0.08%
ADC
2
0.08%
BBE
2
0.08%
FK
2
0.08%
DWF5
2
0.08%
DWF7
2
0.08%
SQE
2
0.08%
HMGR
2
0.08%
DXR
2
0.08%
XMT_MXMT_DXMT
1
0.04%
DWF1
1
0.04%
CPI1
1
0.04%
PMK
1
0.04%
MDS/IspF
1
0.04%
IDI
1
0.04%
MCT/IspD
1
0.04%
HDR/IspH
1
0.04%
GPPS
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 303 | 18 | BAHD (113) | View species results |
| Alkaloid pathway | 241 | 22 | NMT (42) | View species results |
| Phenylpropanoid pathway | 223 | 12 | POD (99) | View species results |
| Flavonoid pathway | 140 | 11 | UFGT (74) | View species results |
| Rosmarinic acid pathway | 83 | 7 | 4CL (25) | View species results |
| Steroid pathway | 61 | 9 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 825 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 191 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccapcontig001260000310.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Ccapcontig001280000340.1 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Ccapcontig001300000370.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Ccapcontig011770004210.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ccapcontig013070004940.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ccapcontig031960009470.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ccapcontig050690015340.1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| Ccapcontig054330017660.1 | Alkaloid | NMT | medium | pass | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Ccapcontig057780019830.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Ccapcontig059410020490.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Ccapcontig061820024740.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Ccapcontig063830027480.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Ccapcontig063830027490.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Ccapcontig066880030670.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Ccapcontig069750036330.1 | Alkaloid | NMT | medium | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ccapcontig071490039140.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ccapcontig072030040860.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ccapcontig073040042800.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Ccapcontig076520049290.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Ccapcontig076570049420.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Ccapcontig077990053470.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Ccapcontig078070053910.1 | Alkaloid | NMT | low | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Ccapcontig080080057550.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Ccapcontig080430058440.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ccapcontig080960059870.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ccapcontig081090060640.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Ccapcontig090270078330.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ccapcontig090360078750.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Ccapcontig090800079230.1 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| Ccapcontig091570080700.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Ccapcontig096060094360.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ccapcontig097420100780.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ccapcontig097790102330.1 | Alkaloid | NMT | medium | pass | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| Ccapcontig098740105850.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Ccapcontig099240107840.1 | Alkaloid | NMT | low | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| Ccapcontig099270107920.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Ccapcontig100880113780.1 | Alkaloid | NMT | medium | borderline | NMT__00018__sp_I1M2U5_NAMT1_SOYBN |
| Ccapcontig100880113790.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Ccapcontig101110114590.1 | Alkaloid | NMT | low | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Ccapcontig101190114910.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ccapcontig101890116460.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Ccapcontig102240117200.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Ccapcontig103490123510.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Ccapcontig103630124760.1 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Ccapcontig104070127680.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Ccapcontig105480133270.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Ccapcontig106200136800.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ccapcontig110490152280.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Ccapcontig110770154670.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ccapcontig111010155740.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |