PlantSME Plant secondary metabolism enzyme database

Corchorus capsularis (corchorus_capsularis)

Imported from atlas release summary for Corchorus capsularis.

1051
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 303 18 BAHD (113) View species results
Alkaloid pathway 241 22 NMT (42) View species results
Phenylpropanoid pathway 223 12 POD (99) View species results
Flavonoid pathway 140 11 UFGT (74) View species results
Rosmarinic acid pathway 83 7 4CL (25) View species results
Steroid pathway 61 9 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 825 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 191 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Ccapcontig000580000180.1 Alkaloid T3O low borderline
Ccapcontig011830004240.1 Alkaloid T3O medium borderline
Ccapcontig050880015780.1 Alkaloid T3O medium borderline
Ccapcontig061040022630.1 Alkaloid T3O medium borderline
Ccapcontig062980026320.1 Alkaloid T3O medium borderline
Ccapcontig065290028720.1 Alkaloid T3O medium borderline
Ccapcontig065580029070.1 Alkaloid T3O medium borderline
Ccapcontig079950057440.1 Alkaloid T3O medium borderline
Ccapcontig080400058330.1 Alkaloid T3O medium pass
Ccapcontig080960059890.1 Alkaloid T3O medium borderline
Ccapcontig081520062160.1 Alkaloid T3O medium pass
Ccapcontig083580066430.1 Alkaloid T3O medium pass
Ccapcontig084290067720.1 Alkaloid T3O medium pass
Ccapcontig087030072500.1 Alkaloid T3O medium pass
Ccapcontig088440074400.1 Alkaloid T3O low borderline
Ccapcontig090870079360.1 Alkaloid T3O medium pass
Ccapcontig092240083390.1 Alkaloid T3O medium pass
Ccapcontig094650089200.1 Alkaloid T3O medium pass
Ccapcontig095470092020.1 Alkaloid T3O medium pass
Ccapcontig096310095570.1 Alkaloid T3O low borderline
Ccapcontig103070120280.1 Alkaloid T3O medium pass
Ccapcontig103700125120.1 Alkaloid T3O medium borderline
Ccapcontig104160128280.1 Alkaloid T3O medium pass
Ccapcontig105260131360.1 Alkaloid T3O low borderline
Ccapcontig105410132440.1 Alkaloid T3O low borderline
Ccapcontig105540133530.1 Alkaloid T3O medium pass
Ccapcontig105890135180.1 Alkaloid T3O medium pass
Ccapcontig107980142300.1 Alkaloid T3O medium pass
Ccapcontig107980142310.1 Alkaloid T3O medium pass
Ccapcontig107990142320.1 Alkaloid T3O medium pass
Ccapcontig108700145100.1 Alkaloid T3O low borderline
Ccapcontig110150151570.1 Alkaloid T3O medium pass
Ccapcontig110570152850.1 Alkaloid T3O low borderline
Ccapcontig111110156140.1 Alkaloid T3O medium borderline
Ccapcontig111110156150.1 Alkaloid T3O medium borderline
Ccapcontig111600159740.1 Alkaloid T3O medium pass
Ccapcontig112440162950.1 Alkaloid T3O medium pass
Ccapcontig114830168440.1 Alkaloid T3O medium borderline
Ccapcontig114830168450.1 Alkaloid T3O medium borderline
Ccapcontig114860168460.1 Alkaloid T3O medium borderline
Ccapcontig114860168470.1 Alkaloid T3O medium borderline
Ccapcontig118470179400.1 Alkaloid T3O low borderline
Ccapcontig118620179850.1 Alkaloid T3O medium pass
Ccapcontig124030192000.1 Alkaloid T3O medium borderline
Ccapcontig124650195540.1 Alkaloid T3O medium borderline
Ccapcontig125290198540.1 Alkaloid T3O medium pass
Ccapcontig125290198550.1 Alkaloid T3O medium pass
Ccapcontig125290198580.1 Alkaloid T3O medium borderline
Ccapcontig125290198590.1 Alkaloid T3O medium borderline
Ccapcontig129170210930.1 Alkaloid T3O medium pass