PlantSME Plant secondary metabolism enzyme database

Corchorus capsularis (corchorus_capsularis)

Imported from atlas release summary for Corchorus capsularis.

1051
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 303 18 BAHD (113) View species results
Alkaloid pathway 241 22 NMT (42) View species results
Phenylpropanoid pathway 223 12 POD (99) View species results
Flavonoid pathway 140 11 UFGT (74) View species results
Rosmarinic acid pathway 83 7 4CL (25) View species results
Steroid pathway 61 9 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 825 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 191 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Gene Pathway Family Confidence Status
Ccapcontig105230131090.1 Flavonoid ANR low borderline
Ccapcontig108790145680.1 Flavonoid ANR medium borderline
Ccapcontig109860151020.1 Flavonoid ANR medium borderline
Ccapcontig118500179490.1 Flavonoid ANR medium borderline
Ccapcontig119140180760.1 Flavonoid ANR medium borderline
Ccapcontig119960182090.1 Flavonoid ANR medium borderline
Ccapcontig119960182110.1 Flavonoid ANR medium borderline
Ccapcontig124780196470.1 Flavonoid ANR low borderline
Ccapcontig128390206220.1 Flavonoid ANR medium borderline
Ccapcontig128390206230.1 Flavonoid ANR medium borderline
Ccapcontig128400206240.1 Flavonoid ANR medium borderline
Ccapcontig153240272510.1 Flavonoid ANR medium borderline
Ccapcontig157580279900.1 Flavonoid ANR medium borderline
Ccapcontig161540287120.1 Flavonoid ANR medium borderline
Ccapcontig161560287150.1 Flavonoid ANR low borderline
Ccapcontig095570092420.1 Flavonoid ANS/LDOX medium borderline
Ccapcontig100520112180.1 Flavonoid ANS/LDOX medium borderline
Ccapcontig100520112190.1 Flavonoid ANS/LDOX low borderline
Ccapcontig100860113710.1 Flavonoid ANS/LDOX medium borderline
Ccapcontig105470133080.1 Flavonoid ANS/LDOX medium borderline
Ccapcontig108610144140.1 Flavonoid ANS/LDOX medium pass
Ccapcontig108740145430.1 Flavonoid ANS/LDOX low borderline
Ccapcontig111540159290.1 Flavonoid ANS/LDOX medium borderline
Ccapcontig111540159300.1 Flavonoid ANS/LDOX medium pass
Ccapcontig118440179280.1 Flavonoid ANS/LDOX medium borderline
Ccapcontig139140233720.1 Flavonoid ANS/LDOX low borderline
Ccapcontig155390275970.1 Flavonoid ANS/LDOX low borderline
Ccapcontig067050031000.1 Flavonoid C4H medium borderline
Ccapcontig092000082160.1 Flavonoid C4H medium borderline
Ccapcontig095660092940.1 Flavonoid C4H low borderline
Ccapcontig099530108720.1 Flavonoid C4H medium borderline
Ccapcontig102460118300.1 Flavonoid C4H low borderline
Ccapcontig107990142320.1 Flavonoid C4H low borderline
Ccapcontig129260211150.1 Flavonoid C4H low borderline
Ccapcontig155150275590.1 Flavonoid C4H medium borderline
Ccapcontig085940070400.1 Flavonoid CHI low borderline
Ccapcontig129170210940.1 Flavonoid CHI medium pass
Ccapcontig140100235580.1 Flavonoid CHI medium pass
Ccapcontig009870002940.1 Flavonoid CHS medium pass
Ccapcontig088240074100.1 Flavonoid CHS medium pass
Ccapcontig096030094220.1 Flavonoid CHS medium pass
Ccapcontig103550124110.1 Flavonoid CHS medium pass
Ccapcontig103560124120.1 Flavonoid CHS medium pass
Ccapcontig111270157400.1 Flavonoid CHS medium pass
Ccapcontig116590172000.1 Flavonoid CHS medium pass
Ccapcontig120150183270.1 Flavonoid CHS low borderline
Ccapcontig132920216590.1 Flavonoid CHS low borderline
Ccapcontig146460256500.1 Flavonoid CHS medium pass
Ccapcontig146460256510.1 Flavonoid CHS medium pass
Ccapcontig149090261180.1 Flavonoid CHS low borderline