PlantSME Plant secondary metabolism enzyme database

Cyathodium cavernarum (cyathodium_cavernarum)

Imported from atlas release summary for Cyathodium cavernarum.

634
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.66% Terpenoid pathway 24.13% Alkaloid pathway 20.98% Flavonoid pathway 12.62% Rosmarinic acid pathway 11.04% Steroid pathway 4.57%
Family Distribution
C4H 6.9% C3'H/CYP98A 6.68% BAHD 5.5% POD 4.85% CYP76 4.63% IFS 3.88% T3O 3.66% BR6OX2/CYP85A2 2.96%
Other Families 60.94%
More Families (94)
NMT 54 2.91% 4CL 54 2.91% UGT 51 2.75% UFGT 50 2.69% 7DLGT 48 2.59% DWF4/CYP90B1 39 2.1% HCT 36 1.94% F3'H/CYP75B 34 1.83% STR 33 1.78% F3H 33 1.78% RAS 30 1.62% PAL 27 1.45% PYKS 24 1.29% F3'5'H/CYP75A 22 1.19% CSE 22 1.19% IO 21 1.13% G8O/G8H 21 1.13% LAMT 20 1.08% IFR 19 1.02% CHS 19 1.02% SMT1/SMT2/SMT3 19 1.02% GS 18 0.97% CYP71 18 0.97% ANR 17 0.92% CAD 17 0.92% ROT3/CYP90C1 17 0.92% TRI/TRII 16 0.86% COMT 16 0.86% CODM/T6ODM 15 0.81% T16H 13 0.7% BR6OX1/CYP85A1 13 0.7% H6H 12 0.65% FNS 12 0.65% CAS 12 0.65% CNMT 11 0.59% TYDC_DDC 11 0.59% 16OMT 11 0.59% F5H/CYP84A 11 0.59% CCR 11 0.59% CYP80B1 10 0.54% SGD 10 0.54% NCS 9 0.48% SLS 9 0.48% CPD/CYP90A1 9 0.48% TPS 9 0.48% CYP719 7 0.38% COR 7 0.38% CYP90D1 7 0.38% GES 6 0.32% PMT 6 0.32% TAT 6 0.32% CPR 6 0.32% TDC 5 0.27% 7DLH 5 0.27% GGPPS 5 0.27% ADC 4 0.22% 8HGO 4 0.22% CHI 4 0.22% DFR 4 0.22% LAC 4 0.22% SQS/FDFT1 4 0.22% DET2 4 0.22% CYP51G1 4 0.22% FPPS 4 0.22% XMT_MXMT_DXMT 3 0.16% AACT 3 0.16% HMGR 3 0.16% MDS/IspF 3 0.16% MVK 3 0.16% ISY 2 0.11% CYP80F1 2 0.11% MPO 2 0.11% CCoAOMT 2 0.11% SQE 2 0.11% SMO1/SMO2 2 0.11% DWF5 2 0.11% DWF1 2 0.11% DXS 2 0.11% DXR 2 0.11% HDR/IspH 2 0.11% MCT/IspD 2 0.11% BBE 1 0.05% FLS 1 0.05% HPPR 1 0.05% DWF7 1 0.05% CPI1 1 0.05% FK 1 0.05% HYD1 1 0.05% PMK 1 0.05% MVD 1 0.05% HMGS 1 0.05% CMK/IspE 1 0.05% IDI 1 0.05% HDS/IspG 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 169 11 POD (86) View species results
Terpenoid pathway 153 19 BAHD (52) View species results
Alkaloid pathway 133 22 T3O (31) View species results
Flavonoid pathway 80 7 UFGT (45) View species results
Rosmarinic acid pathway 70 7 C4H (33) View species results
Steroid pathway 29 12 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 795 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 168 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
Ccavscaffold_150049580 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Ccavscaffold_190058930 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Ccavscaffold_210064220 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Ccavscaffold_210064250 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Ccavscaffold_240071200 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Ccavscaffold_510127900 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Ccavscaffold_640163830 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Ccavscaffold_660176010 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Ccavscaffold_660176030 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Ccavscaffold_80211700 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Ccavscaffold_950260270 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ