Cyathodium cavernarum (cyathodium_cavernarum)
Imported from atlas release summary for Cyathodium cavernarum.
634
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
634
Candidate Genes
C4H
6.9%
C3'H/CYP98A
6.68%
BAHD
5.5%
POD
4.85%
CYP76
4.63%
IFS
3.88%
T3O
3.66%
BR6OX2/CYP85A2
2.96%
Other Families
60.94%
More Families (94)
NMT
54
2.91%
4CL
54
2.91%
UGT
51
2.75%
UFGT
50
2.69%
7DLGT
48
2.59%
DWF4/CYP90B1
39
2.1%
HCT
36
1.94%
F3'H/CYP75B
34
1.83%
STR
33
1.78%
F3H
33
1.78%
RAS
30
1.62%
PAL
27
1.45%
PYKS
24
1.29%
F3'5'H/CYP75A
22
1.19%
CSE
22
1.19%
IO
21
1.13%
G8O/G8H
21
1.13%
LAMT
20
1.08%
IFR
19
1.02%
CHS
19
1.02%
SMT1/SMT2/SMT3
19
1.02%
GS
18
0.97%
CYP71
18
0.97%
ANR
17
0.92%
CAD
17
0.92%
ROT3/CYP90C1
17
0.92%
TRI/TRII
16
0.86%
COMT
16
0.86%
CODM/T6ODM
15
0.81%
T16H
13
0.7%
BR6OX1/CYP85A1
13
0.7%
H6H
12
0.65%
FNS
12
0.65%
CAS
12
0.65%
CNMT
11
0.59%
TYDC_DDC
11
0.59%
16OMT
11
0.59%
F5H/CYP84A
11
0.59%
CCR
11
0.59%
CYP80B1
10
0.54%
SGD
10
0.54%
NCS
9
0.48%
SLS
9
0.48%
CPD/CYP90A1
9
0.48%
TPS
9
0.48%
CYP719
7
0.38%
COR
7
0.38%
CYP90D1
7
0.38%
GES
6
0.32%
PMT
6
0.32%
TAT
6
0.32%
CPR
6
0.32%
TDC
5
0.27%
7DLH
5
0.27%
GGPPS
5
0.27%
ADC
4
0.22%
8HGO
4
0.22%
CHI
4
0.22%
DFR
4
0.22%
LAC
4
0.22%
SQS/FDFT1
4
0.22%
DET2
4
0.22%
CYP51G1
4
0.22%
FPPS
4
0.22%
XMT_MXMT_DXMT
3
0.16%
AACT
3
0.16%
HMGR
3
0.16%
MDS/IspF
3
0.16%
MVK
3
0.16%
ISY
2
0.11%
CYP80F1
2
0.11%
MPO
2
0.11%
CCoAOMT
2
0.11%
SQE
2
0.11%
SMO1/SMO2
2
0.11%
DWF5
2
0.11%
DWF1
2
0.11%
DXS
2
0.11%
DXR
2
0.11%
HDR/IspH
2
0.11%
MCT/IspD
2
0.11%
BBE
1
0.05%
FLS
1
0.05%
HPPR
1
0.05%
DWF7
1
0.05%
CPI1
1
0.05%
FK
1
0.05%
HYD1
1
0.05%
PMK
1
0.05%
MVD
1
0.05%
HMGS
1
0.05%
CMK/IspE
1
0.05%
IDI
1
0.05%
HDS/IspG
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 169 | 11 | POD (86) | View species results |
| Terpenoid pathway | 153 | 19 | BAHD (52) | View species results |
| Alkaloid pathway | 133 | 22 | T3O (31) | View species results |
| Flavonoid pathway | 80 | 7 | UFGT (45) | View species results |
| Rosmarinic acid pathway | 70 | 7 | C4H (33) | View species results |
| Steroid pathway | 29 | 12 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 795 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 168 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccavscaffold_100001000 | Alkaloid | NMT | low | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Ccavscaffold_1010009560 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Ccavscaffold_1010009740 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| Ccavscaffold_1010010880 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Ccavscaffold_1010013910 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ccavscaffold_1010014460 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Ccavscaffold_1010014600 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| Ccavscaffold_110023410 | Alkaloid | NMT | low | borderline | NMT__00025__sp_P93831_CLF_ARATH |
| Ccavscaffold_110023430 | Alkaloid | NMT | low | borderline | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| Ccavscaffold_110028800 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Ccavscaffold_110028910 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Ccavscaffold_110029330 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Ccavscaffold_150043960 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Ccavscaffold_150048960 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Ccavscaffold_150050770 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Ccavscaffold_190059490 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Ccavscaffold_200062000 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Ccavscaffold_290078140 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Ccavscaffold_350086960 | Alkaloid | NMT | low | borderline | NMT__00019__sp_O22781_SUVH2_ARATH |
| Ccavscaffold_40097640 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Ccavscaffold_420101240 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Ccavscaffold_450116340 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ccavscaffold_450120600 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Ccavscaffold_510129530 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| Ccavscaffold_520133370 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Ccavscaffold_590137560 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Ccavscaffold_600145440 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Ccavscaffold_600147330 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Ccavscaffold_600153600 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Ccavscaffold_650169480 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Ccavscaffold_70182990 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Ccavscaffold_70184240 | Alkaloid | NMT | low | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Ccavscaffold_710193510 | Alkaloid | NMT | medium | pass | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| Ccavscaffold_710194650 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ccavscaffold_710196220 | Alkaloid | NMT | low | borderline | NMT__00019__sp_O22781_SUVH2_ARATH |
| Ccavscaffold_710196720 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Ccavscaffold_710196730 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Ccavscaffold_760206300 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Ccavscaffold_800214730 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Ccavscaffold_800216370 | Alkaloid | NMT | low | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Ccavscaffold_800218280 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Ccavscaffold_800220080 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Ccavscaffold_80208870 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ccavscaffold_810226970 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Ccavscaffold_850237010 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Ccavscaffold_860240980 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Ccavscaffold_880248160 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ccavscaffold_880252460 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ccavscaffold_930256140 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ccavscaffold_930256710 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |