Cyathodium cavernarum (cyathodium_cavernarum)
Imported from atlas release summary for Cyathodium cavernarum.
634
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
634
Candidate Genes
C4H
6.9%
C3'H/CYP98A
6.68%
BAHD
5.5%
POD
4.85%
CYP76
4.63%
IFS
3.88%
T3O
3.66%
BR6OX2/CYP85A2
2.96%
Other Families
60.94%
More Families (94)
NMT
54
2.91%
4CL
54
2.91%
UGT
51
2.75%
UFGT
50
2.69%
7DLGT
48
2.59%
DWF4/CYP90B1
39
2.1%
HCT
36
1.94%
F3'H/CYP75B
34
1.83%
STR
33
1.78%
F3H
33
1.78%
RAS
30
1.62%
PAL
27
1.45%
PYKS
24
1.29%
F3'5'H/CYP75A
22
1.19%
CSE
22
1.19%
IO
21
1.13%
G8O/G8H
21
1.13%
LAMT
20
1.08%
IFR
19
1.02%
CHS
19
1.02%
SMT1/SMT2/SMT3
19
1.02%
GS
18
0.97%
CYP71
18
0.97%
ANR
17
0.92%
CAD
17
0.92%
ROT3/CYP90C1
17
0.92%
TRI/TRII
16
0.86%
COMT
16
0.86%
CODM/T6ODM
15
0.81%
T16H
13
0.7%
BR6OX1/CYP85A1
13
0.7%
H6H
12
0.65%
FNS
12
0.65%
CAS
12
0.65%
CNMT
11
0.59%
TYDC_DDC
11
0.59%
16OMT
11
0.59%
F5H/CYP84A
11
0.59%
CCR
11
0.59%
CYP80B1
10
0.54%
SGD
10
0.54%
NCS
9
0.48%
SLS
9
0.48%
CPD/CYP90A1
9
0.48%
TPS
9
0.48%
CYP719
7
0.38%
COR
7
0.38%
CYP90D1
7
0.38%
GES
6
0.32%
PMT
6
0.32%
TAT
6
0.32%
CPR
6
0.32%
TDC
5
0.27%
7DLH
5
0.27%
GGPPS
5
0.27%
ADC
4
0.22%
8HGO
4
0.22%
CHI
4
0.22%
DFR
4
0.22%
LAC
4
0.22%
SQS/FDFT1
4
0.22%
DET2
4
0.22%
CYP51G1
4
0.22%
FPPS
4
0.22%
XMT_MXMT_DXMT
3
0.16%
AACT
3
0.16%
HMGR
3
0.16%
MDS/IspF
3
0.16%
MVK
3
0.16%
ISY
2
0.11%
CYP80F1
2
0.11%
MPO
2
0.11%
CCoAOMT
2
0.11%
SQE
2
0.11%
SMO1/SMO2
2
0.11%
DWF5
2
0.11%
DWF1
2
0.11%
DXS
2
0.11%
DXR
2
0.11%
HDR/IspH
2
0.11%
MCT/IspD
2
0.11%
BBE
1
0.05%
FLS
1
0.05%
HPPR
1
0.05%
DWF7
1
0.05%
CPI1
1
0.05%
FK
1
0.05%
HYD1
1
0.05%
PMK
1
0.05%
MVD
1
0.05%
HMGS
1
0.05%
CMK/IspE
1
0.05%
IDI
1
0.05%
HDS/IspG
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 169 | 11 | POD (86) | View species results |
| Terpenoid pathway | 153 | 19 | BAHD (52) | View species results |
| Alkaloid pathway | 133 | 22 | T3O (31) | View species results |
| Flavonoid pathway | 80 | 7 | UFGT (45) | View species results |
| Rosmarinic acid pathway | 70 | 7 | C4H (33) | View species results |
| Steroid pathway | 29 | 12 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 795 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 168 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccavscaffold_1000001230 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_1000001240 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_100000270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_1010012790 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_110018960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_110033350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_150042840 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_150047060 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_150050740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_210063330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_210063360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_230070090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_230070730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_280075790 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_360093470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_450113250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_650169990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_650170040 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccavscaffold_660175190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_690182640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_710193040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_730201770 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccavscaffold_800215090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_800218430 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_800219840 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_800219860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_810229090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_810229350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_810229380 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_850238680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_850239880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_990270100 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccavscaffold_990271640 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |