PlantSME Plant secondary metabolism enzyme database

Cyathodium cavernarum (cyathodium_cavernarum)

Imported from atlas release summary for Cyathodium cavernarum.

634
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.66% Terpenoid pathway 24.13% Alkaloid pathway 20.98% Flavonoid pathway 12.62% Rosmarinic acid pathway 11.04% Steroid pathway 4.57%
Family Distribution
C4H 6.9% C3'H/CYP98A 6.68% BAHD 5.5% POD 4.85% CYP76 4.63% IFS 3.88% T3O 3.66% BR6OX2/CYP85A2 2.96%
Other Families 60.94%
More Families (94)
NMT 54 2.91% 4CL 54 2.91% UGT 51 2.75% UFGT 50 2.69% 7DLGT 48 2.59% DWF4/CYP90B1 39 2.1% HCT 36 1.94% F3'H/CYP75B 34 1.83% STR 33 1.78% F3H 33 1.78% RAS 30 1.62% PAL 27 1.45% PYKS 24 1.29% F3'5'H/CYP75A 22 1.19% CSE 22 1.19% IO 21 1.13% G8O/G8H 21 1.13% LAMT 20 1.08% IFR 19 1.02% CHS 19 1.02% SMT1/SMT2/SMT3 19 1.02% GS 18 0.97% CYP71 18 0.97% ANR 17 0.92% CAD 17 0.92% ROT3/CYP90C1 17 0.92% TRI/TRII 16 0.86% COMT 16 0.86% CODM/T6ODM 15 0.81% T16H 13 0.7% BR6OX1/CYP85A1 13 0.7% H6H 12 0.65% FNS 12 0.65% CAS 12 0.65% CNMT 11 0.59% TYDC_DDC 11 0.59% 16OMT 11 0.59% F5H/CYP84A 11 0.59% CCR 11 0.59% CYP80B1 10 0.54% SGD 10 0.54% NCS 9 0.48% SLS 9 0.48% CPD/CYP90A1 9 0.48% TPS 9 0.48% CYP719 7 0.38% COR 7 0.38% CYP90D1 7 0.38% GES 6 0.32% PMT 6 0.32% TAT 6 0.32% CPR 6 0.32% TDC 5 0.27% 7DLH 5 0.27% GGPPS 5 0.27% ADC 4 0.22% 8HGO 4 0.22% CHI 4 0.22% DFR 4 0.22% LAC 4 0.22% SQS/FDFT1 4 0.22% DET2 4 0.22% CYP51G1 4 0.22% FPPS 4 0.22% XMT_MXMT_DXMT 3 0.16% AACT 3 0.16% HMGR 3 0.16% MDS/IspF 3 0.16% MVK 3 0.16% ISY 2 0.11% CYP80F1 2 0.11% MPO 2 0.11% CCoAOMT 2 0.11% SQE 2 0.11% SMO1/SMO2 2 0.11% DWF5 2 0.11% DWF1 2 0.11% DXS 2 0.11% DXR 2 0.11% HDR/IspH 2 0.11% MCT/IspD 2 0.11% BBE 1 0.05% FLS 1 0.05% HPPR 1 0.05% DWF7 1 0.05% CPI1 1 0.05% FK 1 0.05% HYD1 1 0.05% PMK 1 0.05% MVD 1 0.05% HMGS 1 0.05% CMK/IspE 1 0.05% IDI 1 0.05% HDS/IspG 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 169 11 POD (86) View species results
Terpenoid pathway 153 19 BAHD (52) View species results
Alkaloid pathway 133 22 T3O (31) View species results
Flavonoid pathway 80 7 UFGT (45) View species results
Rosmarinic acid pathway 70 7 C4H (33) View species results
Steroid pathway 29 12 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 795 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 168 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
Ccavscaffold_1010015220 Alkaloid LAMT low borderline
Ccavscaffold_1010015230 Alkaloid LAMT low borderline
Ccavscaffold_1010015250 Alkaloid LAMT low borderline
Ccavscaffold_1010015260 Alkaloid LAMT low borderline
Ccavscaffold_1010015300 Alkaloid LAMT low borderline
Ccavscaffold_1010015310 Alkaloid LAMT low borderline
Ccavscaffold_140036060 Alkaloid LAMT low borderline
Ccavscaffold_140036390 Alkaloid LAMT medium pass
Ccavscaffold_140036410 Alkaloid LAMT low borderline
Ccavscaffold_140036430 Alkaloid LAMT low borderline
Ccavscaffold_140036450 Alkaloid LAMT low borderline
Ccavscaffold_140036460 Alkaloid LAMT low borderline
Ccavscaffold_200061960 Alkaloid LAMT medium borderline
Ccavscaffold_290077730 Alkaloid LAMT low borderline
Ccavscaffold_360093150 Alkaloid LAMT low borderline
Ccavscaffold_70186190 Alkaloid LAMT low borderline
Ccavscaffold_810222930 Alkaloid LAMT low borderline
Ccavscaffold_810223310 Alkaloid LAMT low borderline
Ccavscaffold_950265060 Alkaloid LAMT medium borderline
Ccavscaffold_950265110 Alkaloid LAMT medium borderline