Cyathodium cavernarum (cyathodium_cavernarum)
Imported from atlas release summary for Cyathodium cavernarum.
906
Candidate Protein Records
634
Pathway-Level Records
1856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1856
Family-Level Calls
C4H
6.9%
C3'H/CYP98A
6.68%
BAHD
5.5%
POD
4.85%
CYP76
4.63%
IFS
3.88%
T3O
3.66%
BR6OX2/CYP85A2
2.96%
Other Families
60.94%
More Families (94)
NMT
54
2.91%
4CL
54
2.91%
UGT
51
2.75%
UFGT
50
2.69%
7DLGT
48
2.59%
DWF4/CYP90B1
39
2.1%
HCT
36
1.94%
F3'H/CYP75B
34
1.83%
STR
33
1.78%
F3H
33
1.78%
RAS
30
1.62%
PAL
27
1.45%
PYKS
24
1.29%
F3'5'H/CYP75A
22
1.19%
CSE
22
1.19%
IO
21
1.13%
G8O/G8H
21
1.13%
LAMT
20
1.08%
IFR
19
1.02%
CHS
19
1.02%
SMT1/SMT2/SMT3
19
1.02%
GS
18
0.97%
CYP71
18
0.97%
ANR
17
0.92%
CAD
17
0.92%
ROT3/CYP90C1
17
0.92%
TRI/TRII
16
0.86%
COMT
16
0.86%
CODM/T6ODM
15
0.81%
T16H
13
0.7%
BR6OX1/CYP85A1
13
0.7%
H6H
12
0.65%
FNS
12
0.65%
CAS
12
0.65%
CNMT
11
0.59%
TYDC_DDC
11
0.59%
16OMT
11
0.59%
F5H/CYP84A
11
0.59%
CCR
11
0.59%
CYP80B1
10
0.54%
SGD
10
0.54%
NCS
9
0.48%
SLS
9
0.48%
CPD/CYP90A1
9
0.48%
TPS
9
0.48%
CYP719
7
0.38%
COR
7
0.38%
CYP90D1
7
0.38%
GES
6
0.32%
PMT
6
0.32%
TAT
6
0.32%
CPR
6
0.32%
TDC
5
0.27%
7DLH
5
0.27%
GGPPS
5
0.27%
ADC
4
0.22%
8HGO
4
0.22%
CHI
4
0.22%
DFR
4
0.22%
LAC
4
0.22%
SQS/FDFT1
4
0.22%
DET2
4
0.22%
CYP51G1
4
0.22%
FPPS
4
0.22%
XMT_MXMT_DXMT
3
0.16%
AACT
3
0.16%
HMGR
3
0.16%
MDS/IspF
3
0.16%
MVK
3
0.16%
ISY
2
0.11%
CYP80F1
2
0.11%
MPO
2
0.11%
CCoAOMT
2
0.11%
SQE
2
0.11%
SMO1/SMO2
2
0.11%
DWF5
2
0.11%
DWF1
2
0.11%
DXS
2
0.11%
DXR
2
0.11%
HDR/IspH
2
0.11%
MCT/IspD
2
0.11%
BBE
1
0.05%
FLS
1
0.05%
HPPR
1
0.05%
DWF7
1
0.05%
CPI1
1
0.05%
FK
1
0.05%
HYD1
1
0.05%
PMK
1
0.05%
MVD
1
0.05%
HMGS
1
0.05%
CMK/IspE
1
0.05%
IDI
1
0.05%
HDS/IspG
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 169 | 11 | POD (86) | View species results |
| Terpenoid pathway | 153 | 19 | BAHD (52) | View species results |
| Alkaloid pathway | 133 | 22 | T3O (31) | View species results |
| Flavonoid pathway | 80 | 7 | UFGT (45) | View species results |
| Rosmarinic acid pathway | 70 | 7 | C4H (33) | View species results |
| Steroid pathway | 29 | 12 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 795 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 168 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Ccavscaffold_810223250 | Rosmarinic Acid | C4H | medium | pass |
| Ccavscaffold_840234620 | Rosmarinic Acid | C4H | low | borderline |
| Ccavscaffold_850237670 | Rosmarinic Acid | C4H | low | borderline |
| Ccavscaffold_860243520 | Rosmarinic Acid | C4H | medium | pass |
| Ccavscaffold_870244030 | Rosmarinic Acid | C4H | low | borderline |
| Ccavscaffold_880248760 | Rosmarinic Acid | C4H | low | borderline |
| Ccavscaffold_950263230 | Rosmarinic Acid | C4H | low | borderline |
| Ccavscaffold_990269880 | Rosmarinic Acid | C4H | medium | pass |
| Ccavscaffold_450122120 | Rosmarinic Acid | CPR | medium | pass |
| Ccavscaffold_650168580 | Rosmarinic Acid | CPR | low | borderline |
| Ccavscaffold_660174820 | Rosmarinic Acid | CPR | low | borderline |
| Ccavscaffold_710197720 | Rosmarinic Acid | CPR | medium | pass |
| Ccavscaffold_850236790 | Rosmarinic Acid | CPR | medium | pass |
| Ccavscaffold_880249660 | Rosmarinic Acid | CPR | low | borderline |
| Ccavscaffold_600143910 | Rosmarinic Acid | HPPR | medium | pass |
| Ccavscaffold_150048330 | Rosmarinic Acid | PAL | high | pass |
| Ccavscaffold_220066130 | Rosmarinic Acid | PAL | low | borderline |
| Ccavscaffold_350088520 | Rosmarinic Acid | PAL | high | pass |
| Ccavscaffold_440110580 | Rosmarinic Acid | PAL | low | borderline |
| Ccavscaffold_640163850 | Rosmarinic Acid | PAL | low | borderline |
| Ccavscaffold_640163880 | Rosmarinic Acid | PAL | low | borderline |
| Ccavscaffold_640163900 | Rosmarinic Acid | PAL | low | borderline |
| Ccavscaffold_640163940 | Rosmarinic Acid | PAL | medium | pass |
| Ccavscaffold_880249630 | Rosmarinic Acid | PAL | high | pass |
| Ccavscaffold_110021890 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_110023340 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_110029390 | Rosmarinic Acid | RAS | low | borderline |
| Ccavscaffold_110030790 | Rosmarinic Acid | RAS | low | borderline |
| Ccavscaffold_110030820 | Rosmarinic Acid | RAS | low | borderline |
| Ccavscaffold_110031660 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_140039040 | Rosmarinic Acid | RAS | low | borderline |
| Ccavscaffold_150041660 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_150046100 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_150048520 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_200060840 | Rosmarinic Acid | RAS | low | borderline |
| Ccavscaffold_310079560 | Rosmarinic Acid | RAS | low | borderline |
| Ccavscaffold_340082540 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_350090180 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_440107030 | Rosmarinic Acid | RAS | low | borderline |
| Ccavscaffold_450112610 | Rosmarinic Acid | RAS | low | borderline |
| Ccavscaffold_450115520 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_450118850 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_590139130 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_590139650 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_600147450 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_600158150 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_640163340 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_640163360 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_70184720 | Rosmarinic Acid | RAS | medium | pass |
| Ccavscaffold_770208160 | Rosmarinic Acid | RAS | medium | pass |