Cyathodium cavernarum (cyathodium_cavernarum)
Imported from atlas release summary for Cyathodium cavernarum.
634
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
634
Candidate Genes
C4H
6.9%
C3'H/CYP98A
6.68%
BAHD
5.5%
POD
4.85%
CYP76
4.63%
IFS
3.88%
T3O
3.66%
BR6OX2/CYP85A2
2.96%
Other Families
60.94%
More Families (94)
NMT
54
2.91%
4CL
54
2.91%
UGT
51
2.75%
UFGT
50
2.69%
7DLGT
48
2.59%
DWF4/CYP90B1
39
2.1%
HCT
36
1.94%
F3'H/CYP75B
34
1.83%
STR
33
1.78%
F3H
33
1.78%
RAS
30
1.62%
PAL
27
1.45%
PYKS
24
1.29%
F3'5'H/CYP75A
22
1.19%
CSE
22
1.19%
IO
21
1.13%
G8O/G8H
21
1.13%
LAMT
20
1.08%
IFR
19
1.02%
CHS
19
1.02%
SMT1/SMT2/SMT3
19
1.02%
GS
18
0.97%
CYP71
18
0.97%
ANR
17
0.92%
CAD
17
0.92%
ROT3/CYP90C1
17
0.92%
TRI/TRII
16
0.86%
COMT
16
0.86%
CODM/T6ODM
15
0.81%
T16H
13
0.7%
BR6OX1/CYP85A1
13
0.7%
H6H
12
0.65%
FNS
12
0.65%
CAS
12
0.65%
CNMT
11
0.59%
TYDC_DDC
11
0.59%
16OMT
11
0.59%
F5H/CYP84A
11
0.59%
CCR
11
0.59%
CYP80B1
10
0.54%
SGD
10
0.54%
NCS
9
0.48%
SLS
9
0.48%
CPD/CYP90A1
9
0.48%
TPS
9
0.48%
CYP719
7
0.38%
COR
7
0.38%
CYP90D1
7
0.38%
GES
6
0.32%
PMT
6
0.32%
TAT
6
0.32%
CPR
6
0.32%
TDC
5
0.27%
7DLH
5
0.27%
GGPPS
5
0.27%
ADC
4
0.22%
8HGO
4
0.22%
CHI
4
0.22%
DFR
4
0.22%
LAC
4
0.22%
SQS/FDFT1
4
0.22%
DET2
4
0.22%
CYP51G1
4
0.22%
FPPS
4
0.22%
XMT_MXMT_DXMT
3
0.16%
AACT
3
0.16%
HMGR
3
0.16%
MDS/IspF
3
0.16%
MVK
3
0.16%
ISY
2
0.11%
CYP80F1
2
0.11%
MPO
2
0.11%
CCoAOMT
2
0.11%
SQE
2
0.11%
SMO1/SMO2
2
0.11%
DWF5
2
0.11%
DWF1
2
0.11%
DXS
2
0.11%
DXR
2
0.11%
HDR/IspH
2
0.11%
MCT/IspD
2
0.11%
BBE
1
0.05%
FLS
1
0.05%
HPPR
1
0.05%
DWF7
1
0.05%
CPI1
1
0.05%
FK
1
0.05%
HYD1
1
0.05%
PMK
1
0.05%
MVD
1
0.05%
HMGS
1
0.05%
CMK/IspE
1
0.05%
IDI
1
0.05%
HDS/IspG
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 169 | 11 | POD (86) | View species results |
| Terpenoid pathway | 153 | 19 | BAHD (52) | View species results |
| Alkaloid pathway | 133 | 22 | T3O (31) | View species results |
| Flavonoid pathway | 80 | 7 | UFGT (45) | View species results |
| Rosmarinic acid pathway | 70 | 7 | C4H (33) | View species results |
| Steroid pathway | 29 | 12 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 795 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 168 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccavscaffold_190058920 | Phenylpropanoid | POD | medium | pass | POD__00023__sp_Q9M7T0_PRX2F_ARATH |
| Ccavscaffold_200061430 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Ccavscaffold_220065060 | Phenylpropanoid | POD | medium | pass | POD__00020__sp_Q9FE01_APX2_ORYSJ |
| Ccavscaffold_220066690 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Ccavscaffold_290077960 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Ccavscaffold_290078440 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Ccavscaffold_300078910 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Ccavscaffold_340081320 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Ccavscaffold_340081890 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Ccavscaffold_340081910 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Ccavscaffold_340081920 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Ccavscaffold_340082750 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Ccavscaffold_340082990 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Ccavscaffold_340083000 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Ccavscaffold_350086880 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Ccavscaffold_350090020 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| Ccavscaffold_350091190 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| Ccavscaffold_430104260 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Ccavscaffold_430104280 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Ccavscaffold_440109390 | Phenylpropanoid | POD | medium | pass | POD__00014__sp_Q4W1I9_PER2_ZINEL |
| Ccavscaffold_440111470 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Ccavscaffold_440111920 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Ccavscaffold_450112430 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| Ccavscaffold_450112500 | Phenylpropanoid | POD | medium | pass | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| Ccavscaffold_450114380 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Ccavscaffold_450121380 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Ccavscaffold_450121430 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Ccavscaffold_450124030 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Ccavscaffold_510127670 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Ccavscaffold_510127860 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Ccavscaffold_580135350 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Ccavscaffold_580135980 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Ccavscaffold_580136670 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Ccavscaffold_580137100 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Ccavscaffold_580137190 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Ccavscaffold_590139820 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Ccavscaffold_590139830 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Ccavscaffold_600143470 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Ccavscaffold_600145460 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Ccavscaffold_600146200 | Phenylpropanoid | POD | low | borderline | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| Ccavscaffold_600156270 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Ccavscaffold_600158200 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Ccavscaffold_660172760 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Ccavscaffold_660172770 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Ccavscaffold_660172780 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Ccavscaffold_660173070 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Ccavscaffold_660174050 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Ccavscaffold_660179400 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Ccavscaffold_70184850 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Ccavscaffold_70185370 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |