PlantSME Plant secondary metabolism enzyme database

Cynara cardunculus (cynara_cardunculus)

Imported from atlas release summary for Cynara cardunculus.

1342
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 406 20 BAHD (173) View species results
Phenylpropanoid pathway 286 11 POD (124) View species results
Alkaloid pathway 264 21 7DLGT (43) View species results
Flavonoid pathway 170 10 UFGT (104) View species results
Rosmarinic acid pathway 132 7 C4H (60) View species results
Steroid pathway 84 12 SMT1/SMT2/SMT3 (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1534 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 265 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status
Ccarscaffold_1010004860.1 Phenylpropanoid CSE medium pass
Ccarscaffold_103630007430.1 Phenylpropanoid CSE medium pass
Ccarscaffold_1220025930.1 Phenylpropanoid CSE medium pass
Ccarscaffold_123160026930.1 Phenylpropanoid CSE medium pass
Ccarscaffold_14340043110.1 Phenylpropanoid CSE low borderline
Ccarscaffold_14340043120.1 Phenylpropanoid CSE low borderline
Ccarscaffold_15450050830.1 Phenylpropanoid CSE medium pass
Ccarscaffold_16630058710.1 Phenylpropanoid CSE low borderline
Ccarscaffold_1880071960.1 Phenylpropanoid CSE medium pass
Ccarscaffold_210085340.1 Phenylpropanoid CSE medium pass
Ccarscaffold_21350087520.1 Phenylpropanoid CSE low borderline
Ccarscaffold_30126770.1 Phenylpropanoid CSE medium pass
Ccarscaffold_32020135340.1 Phenylpropanoid CSE medium pass
Ccarscaffold_3220135920.1 Phenylpropanoid CSE medium pass
Ccarscaffold_3690149960.1 Phenylpropanoid CSE medium pass
Ccarscaffold_3690149980.1 Phenylpropanoid CSE medium pass
Ccarscaffold_37450151580.1 Phenylpropanoid CSE medium pass
Ccarscaffold_3770152330.1 Phenylpropanoid CSE medium pass
Ccarscaffold_4050161370.1 Phenylpropanoid CSE medium pass
Ccarscaffold_40850162260.1 Phenylpropanoid CSE medium pass
Ccarscaffold_42900168040.1 Phenylpropanoid CSE low borderline
Ccarscaffold_43820170350.1 Phenylpropanoid CSE medium pass
Ccarscaffold_43820170370.1 Phenylpropanoid CSE medium pass
Ccarscaffold_470178490.1 Phenylpropanoid CSE medium pass
Ccarscaffold_47480179660.1 Phenylpropanoid CSE medium pass
Ccarscaffold_610209300.1 Phenylpropanoid CSE medium pass
Ccarscaffold_610209390.1 Phenylpropanoid CSE medium pass
Ccarscaffold_610209440.1 Phenylpropanoid CSE medium pass
Ccarscaffold_630212520.1 Phenylpropanoid CSE medium pass
Ccarscaffold_6390213910.1 Phenylpropanoid CSE medium pass
Ccarscaffold_690223730.1 Phenylpropanoid CSE medium pass
Ccarscaffold_7150228080.1 Phenylpropanoid CSE medium pass
Ccarscaffold_7710236870.1 Phenylpropanoid CSE low borderline
Ccarscaffold_830245410.1 Phenylpropanoid CSE medium pass
Ccarscaffold_8770251950.1 Phenylpropanoid CSE medium pass
Ccarscaffold_930258340.1 Phenylpropanoid CSE medium pass