PlantSME Plant secondary metabolism enzyme database

Cynara cardunculus (cynara_cardunculus)

Imported from atlas release summary for Cynara cardunculus.

1342
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 406 20 BAHD (173) View species results
Phenylpropanoid pathway 286 11 POD (124) View species results
Alkaloid pathway 264 21 7DLGT (43) View species results
Flavonoid pathway 170 10 UFGT (104) View species results
Rosmarinic acid pathway 132 7 C4H (60) View species results
Steroid pathway 84 12 SMT1/SMT2/SMT3 (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1534 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 265 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status
Ccarscaffold_11170015660.1 Alkaloid GES low borderline
Ccarscaffold_11420018510.1 Alkaloid GES medium pass
Ccarscaffold_117450021300.1 Alkaloid GES medium pass
Ccarscaffold_11930023010.1 Alkaloid GES medium pass
Ccarscaffold_1290031690.1 Alkaloid GES medium borderline
Ccarscaffold_17400063450.1 Alkaloid GES low borderline
Ccarscaffold_1880072070.1 Alkaloid GES low borderline
Ccarscaffold_21760089200.1 Alkaloid GES medium pass
Ccarscaffold_21760089230.1 Alkaloid GES medium pass
Ccarscaffold_23150096680.1 Alkaloid GES medium pass
Ccarscaffold_23150096690.1 Alkaloid GES medium pass
Ccarscaffold_23870099170.1 Alkaloid GES low borderline
Ccarscaffold_2960124810.1 Alkaloid GES low borderline
Ccarscaffold_3210135520.1 Alkaloid GES medium pass
Ccarscaffold_3210135530.1 Alkaloid GES medium pass
Ccarscaffold_3230136360.1 Alkaloid GES medium pass
Ccarscaffold_3230136390.1 Alkaloid GES medium pass
Ccarscaffold_45130174350.1 Alkaloid GES medium pass
Ccarscaffold_45810176010.1 Alkaloid GES medium pass
Ccarscaffold_5320193250.1 Alkaloid GES medium pass
Ccarscaffold_5320193270.1 Alkaloid GES medium pass
Ccarscaffold_5320193280.1 Alkaloid GES medium pass
Ccarscaffold_5320193310.1 Alkaloid GES medium pass
Ccarscaffold_61470210130.1 Alkaloid GES medium pass
Ccarscaffold_61670210300.1 Alkaloid GES medium pass
Ccarscaffold_62180211520.1 Alkaloid GES medium pass
Ccarscaffold_63310213350.1 Alkaloid GES low borderline
Ccarscaffold_6430215290.1 Alkaloid GES medium pass
Ccarscaffold_67920221410.1 Alkaloid GES low borderline
Ccarscaffold_71020227710.1 Alkaloid GES medium pass
Ccarscaffold_74750233030.1 Alkaloid GES medium pass
Ccarscaffold_7530234210.1 Alkaloid GES medium pass
Ccarscaffold_76970236110.1 Alkaloid GES medium pass
Ccarscaffold_78320238350.1 Alkaloid GES medium pass
Ccarscaffold_84420247570.1 Alkaloid GES medium pass
Ccarscaffold_91090256350.1 Alkaloid GES medium pass
Ccarscaffold_97980263220.1 Alkaloid GES medium pass