Cynara cardunculus (cynara_cardunculus)
Imported from atlas release summary for Cynara cardunculus.
1342
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1342
Candidate Genes
C4H
6.79%
C3'H/CYP98A
6.23%
BAHD
6.12%
CYP76
4.33%
4CL
3.83%
POD
3.81%
IFS
3.61%
T3O
3.53%
Other Families
61.74%
More Families (96)
UGT
119
3.28%
7DLGT
112
3.09%
UFGT
110
3.03%
F3'H/CYP75B
107
2.95%
F3H
93
2.57%
DWF4/CYP90B1
90
2.48%
BR6OX2/CYP85A2
71
1.96%
NMT
68
1.88%
SMT1/SMT2/SMT3
63
1.74%
STR
62
1.71%
CODM/T6ODM
59
1.63%
CYP71
52
1.43%
H6H
45
1.24%
LAC
45
1.24%
TRI/TRII
43
1.19%
G8O/G8H
41
1.13%
TPS
41
1.13%
F5H/CYP84A
40
1.1%
CAD
39
1.08%
GES
37
1.02%
CYP51G1
37
1.02%
CSE
36
0.99%
CAS
34
0.94%
PYKS
33
0.91%
IO
33
0.91%
CYP90D1
33
0.91%
GS
32
0.88%
IFR
32
0.88%
TAT
28
0.77%
SLS
26
0.72%
HCT
26
0.72%
7DLH
25
0.69%
T16H
22
0.61%
FNS
22
0.61%
PMT
20
0.55%
SGD
20
0.55%
F3'5'H/CYP75A
20
0.55%
COMT
20
0.55%
BBE
19
0.52%
NCS
17
0.47%
RAS
17
0.47%
DFR
15
0.41%
CPD/CYP90A1
15
0.41%
CCR
14
0.39%
BR6OX1/CYP85A1
14
0.39%
HMGR
14
0.39%
8HGO
13
0.36%
PAL
12
0.33%
CNMT
11
0.3%
MPO
11
0.3%
CPR
11
0.3%
16OMT
10
0.28%
ANS/LDOX
10
0.28%
CHS
10
0.28%
ANR
10
0.28%
CCoAOMT
10
0.28%
GGPPS
10
0.28%
ROT3/CYP90C1
9
0.25%
FPPS
9
0.25%
DET2
8
0.22%
SQS/FDFT1
8
0.22%
CYP719
7
0.19%
ISY
7
0.19%
SQE
7
0.19%
AACT
7
0.19%
COR
6
0.17%
TYDC_DDC
6
0.17%
LAMT
6
0.17%
HPPR
6
0.17%
DXS
6
0.17%
ADC
5
0.14%
SMO1/SMO2
5
0.14%
DWF7
5
0.14%
6OMT_4OMT_SOMT
4
0.11%
CYP80B1
4
0.11%
CHI
4
0.11%
MCT/IspD
4
0.11%
XMT_MXMT_DXMT
3
0.08%
FLS
3
0.08%
DWF1
3
0.08%
CPI1
3
0.08%
MVD
3
0.08%
MVK
3
0.08%
HMGS
2
0.06%
IDI
2
0.06%
PMK
2
0.06%
GPPS
2
0.06%
DXR
2
0.06%
TDC
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
HYD1
1
0.03%
MDS/IspF
1
0.03%
CMK/IspE
1
0.03%
HDR/IspH
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 406 | 20 | BAHD (173) | View species results |
| Phenylpropanoid pathway | 286 | 11 | POD (124) | View species results |
| Alkaloid pathway | 264 | 21 | 7DLGT (43) | View species results |
| Flavonoid pathway | 170 | 10 | UFGT (104) | View species results |
| Rosmarinic acid pathway | 132 | 7 | C4H (60) | View species results |
| Steroid pathway | 84 | 12 | SMT1/SMT2/SMT3 (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1534 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 265 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Ccarscaffold_10001960.1 | Alkaloid | PMT | low | borderline |
| Ccarscaffold_10240006610.1 | Alkaloid | PMT | medium | borderline |
| Ccarscaffold_1110015280.1 | Alkaloid | PMT | medium | borderline |
| Ccarscaffold_1170020960.1 | Alkaloid | PMT | medium | borderline |
| Ccarscaffold_1230026790.1 | Alkaloid | PMT | low | borderline |
| Ccarscaffold_1320034390.1 | Alkaloid | PMT | low | borderline |
| Ccarscaffold_1420042000.1 | Alkaloid | PMT | medium | borderline |
| Ccarscaffold_19280075320.1 | Alkaloid | PMT | medium | pass |
| Ccarscaffold_3200135260.1 | Alkaloid | PMT | low | borderline |
| Ccarscaffold_3460143810.1 | Alkaloid | PMT | low | borderline |
| Ccarscaffold_38770155300.1 | Alkaloid | PMT | medium | pass |
| Ccarscaffold_39030156090.1 | Alkaloid | PMT | low | borderline |
| Ccarscaffold_5320193390.1 | Alkaloid | PMT | medium | pass |
| Ccarscaffold_55620197660.1 | Alkaloid | PMT | low | borderline |
| Ccarscaffold_60670208660.1 | Alkaloid | PMT | low | borderline |
| Ccarscaffold_720229180.1 | Alkaloid | PMT | low | borderline |
| Ccarscaffold_80240030.1 | Alkaloid | PMT | medium | pass |
| Ccarscaffold_80240040.1 | Alkaloid | PMT | medium | pass |
| Ccarscaffold_840246570.1 | Alkaloid | PMT | low | borderline |
| Ccarscaffold_8450247630.1 | Alkaloid | PMT | low | borderline |