Cynara cardunculus (cynara_cardunculus)
Imported from atlas release summary for Cynara cardunculus.
1342
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1342
Candidate Genes
C4H
6.79%
C3'H/CYP98A
6.23%
BAHD
6.12%
CYP76
4.33%
4CL
3.83%
POD
3.81%
IFS
3.61%
T3O
3.53%
Other Families
61.74%
More Families (96)
UGT
119
3.28%
7DLGT
112
3.09%
UFGT
110
3.03%
F3'H/CYP75B
107
2.95%
F3H
93
2.57%
DWF4/CYP90B1
90
2.48%
BR6OX2/CYP85A2
71
1.96%
NMT
68
1.88%
SMT1/SMT2/SMT3
63
1.74%
STR
62
1.71%
CODM/T6ODM
59
1.63%
CYP71
52
1.43%
H6H
45
1.24%
LAC
45
1.24%
TRI/TRII
43
1.19%
G8O/G8H
41
1.13%
TPS
41
1.13%
F5H/CYP84A
40
1.1%
CAD
39
1.08%
GES
37
1.02%
CYP51G1
37
1.02%
CSE
36
0.99%
CAS
34
0.94%
PYKS
33
0.91%
IO
33
0.91%
CYP90D1
33
0.91%
GS
32
0.88%
IFR
32
0.88%
TAT
28
0.77%
SLS
26
0.72%
HCT
26
0.72%
7DLH
25
0.69%
T16H
22
0.61%
FNS
22
0.61%
PMT
20
0.55%
SGD
20
0.55%
F3'5'H/CYP75A
20
0.55%
COMT
20
0.55%
BBE
19
0.52%
NCS
17
0.47%
RAS
17
0.47%
DFR
15
0.41%
CPD/CYP90A1
15
0.41%
CCR
14
0.39%
BR6OX1/CYP85A1
14
0.39%
HMGR
14
0.39%
8HGO
13
0.36%
PAL
12
0.33%
CNMT
11
0.3%
MPO
11
0.3%
CPR
11
0.3%
16OMT
10
0.28%
ANS/LDOX
10
0.28%
CHS
10
0.28%
ANR
10
0.28%
CCoAOMT
10
0.28%
GGPPS
10
0.28%
ROT3/CYP90C1
9
0.25%
FPPS
9
0.25%
DET2
8
0.22%
SQS/FDFT1
8
0.22%
CYP719
7
0.19%
ISY
7
0.19%
SQE
7
0.19%
AACT
7
0.19%
COR
6
0.17%
TYDC_DDC
6
0.17%
LAMT
6
0.17%
HPPR
6
0.17%
DXS
6
0.17%
ADC
5
0.14%
SMO1/SMO2
5
0.14%
DWF7
5
0.14%
6OMT_4OMT_SOMT
4
0.11%
CYP80B1
4
0.11%
CHI
4
0.11%
MCT/IspD
4
0.11%
XMT_MXMT_DXMT
3
0.08%
FLS
3
0.08%
DWF1
3
0.08%
CPI1
3
0.08%
MVD
3
0.08%
MVK
3
0.08%
HMGS
2
0.06%
IDI
2
0.06%
PMK
2
0.06%
GPPS
2
0.06%
DXR
2
0.06%
TDC
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
HYD1
1
0.03%
MDS/IspF
1
0.03%
CMK/IspE
1
0.03%
HDR/IspH
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 406 | 20 | BAHD (173) | View species results |
| Phenylpropanoid pathway | 286 | 11 | POD (124) | View species results |
| Alkaloid pathway | 264 | 21 | 7DLGT (43) | View species results |
| Flavonoid pathway | 170 | 10 | UFGT (104) | View species results |
| Rosmarinic acid pathway | 132 | 7 | C4H (60) | View species results |
| Steroid pathway | 84 | 12 | SMT1/SMT2/SMT3 (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1534 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 265 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccarscaffold_00001410.1 | Terpenoid | UGT | medium | pass | UGT__00018__sp_A0A224AM54_708G1_CITJP |
| Ccarscaffold_10080004510.1 | Terpenoid | UGT | medium | pass | UGT__00076__sp_Q8L7M0_TUN_ARATH |
| Ccarscaffold_10280006700.1 | Terpenoid | UGT | medium | pass | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| Ccarscaffold_1040007700.1 | Terpenoid | UGT | medium | pass | UGT__00061__sp_P0DO49_U71K3_FRAAN |
| Ccarscaffold_106800010570.1 | Terpenoid | UGT | medium | pass | UGT__00072__sp_Q6VAB0_U85C2_STERE |
| Ccarscaffold_11200016460.1 | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| Ccarscaffold_1190022720.1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Ccarscaffold_1210025080.1 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| Ccarscaffold_12720030400.1 | Terpenoid | UGT | medium | pass | UGT__00072__sp_Q6VAB0_U85C2_STERE |
| Ccarscaffold_12840031310.1 | Terpenoid | UGT | medium | pass | UGT__00022__sp_B2XBQ5_85A19_PRUDU |
| Ccarscaffold_12840031320.1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Ccarscaffold_1440043460.1 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| Ccarscaffold_16050055690.1 | Terpenoid | UGT | medium | pass | UGT__00014__sp_A0A172J2G3_UGT43_PUEML |
| Ccarscaffold_1630056690.1 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| Ccarscaffold_1630056740.1 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| Ccarscaffold_1630056760.1 | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| Ccarscaffold_1640057150.1 | Terpenoid | UGT | low | borderline | UGT__00072__sp_Q6VAB0_U85C2_STERE |
| Ccarscaffold_1640057160.1 | Terpenoid | UGT | medium | pass | UGT__00072__sp_Q6VAB0_U85C2_STERE |
| Ccarscaffold_17240062590.1 | Terpenoid | UGT | medium | pass | UGT__00016__sp_A0A193AUF6_GGT23_PUNGR |
| Ccarscaffold_1780065500.1 | Terpenoid | UGT | medium | pass | UGT__00055__sp_O48676_U74B1_ARATH |
| Ccarscaffold_19050074160.1 | Terpenoid | UGT | low | borderline | UGT__00052__sp_O23401_U84A3_ARATH |
| Ccarscaffold_1940076050.1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Ccarscaffold_19410076120.1 | Terpenoid | UGT | low | borderline | UGT__00046__sp_K4GMD6_73C9_BARVU |
| Ccarscaffold_19750078140.1 | Terpenoid | UGT | low | borderline | UGT__00088__sp_Q9LK73_U88A1_ARATH |
| Ccarscaffold_20890084990.1 | Terpenoid | UGT | medium | pass | UGT__00001__sp_A0A067YB04_UGT1_PUEML |
| Ccarscaffold_21320087370.1 | Terpenoid | UGT | low | borderline | UGT__00071__sp_Q6VAA6_U74G1_STERE |
| Ccarscaffold_2230092470.1 | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| Ccarscaffold_2270094050.1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Ccarscaffold_2270094060.1 | Terpenoid | UGT | medium | pass | UGT__00042__sp_K4GHR9_UGT1_BARVU |
| Ccarscaffold_240100190.1 | Terpenoid | UGT | low | borderline | UGT__00044__sp_K4GIP0_73C12_BARVU |
| Ccarscaffold_240100200.1 | Terpenoid | UGT | low | borderline | UGT__00019__sp_A0A2R4LMF9_73C25_BARVU |
| Ccarscaffold_24030100570.1 | Terpenoid | UGT | low | borderline | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Ccarscaffold_24030100580.1 | Terpenoid | UGT | medium | pass | UGT__00001__sp_A0A067YB04_UGT1_PUEML |
| Ccarscaffold_25710107630.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| Ccarscaffold_25800108010.1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Ccarscaffold_26060109500.1 | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| Ccarscaffold_2620109970.1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Ccarscaffold_26380110480.1 | Terpenoid | UGT | medium | pass | UGT__00013__sp_A0A172J2D0_UGT2_PUEML |
| Ccarscaffold_26740112690.1 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| Ccarscaffold_2700114100.1 | Terpenoid | UGT | low | borderline | UGT__00117__sp_U5NH37_7DLGT_CATRO |
| Ccarscaffold_2700114110.1 | Terpenoid | UGT | low | borderline | UGT__00073__sp_Q6VAB4_U76G1_STERE |
| Ccarscaffold_2710114660.1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Ccarscaffold_29340123620.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| Ccarscaffold_29470124220.1 | Terpenoid | UGT | low | borderline | UGT__00115__sp_U3U992_UGT8_CATRO |
| Ccarscaffold_30410129260.1 | Terpenoid | UGT | medium | pass | UGT__00013__sp_A0A172J2D0_UGT2_PUEML |
| Ccarscaffold_30410129270.1 | Terpenoid | UGT | low | borderline | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| Ccarscaffold_3120132200.1 | Terpenoid | UGT | low | borderline | UGT__00116__sp_U3UA11_UGT7_CATRO |
| Ccarscaffold_3120132210.1 | Terpenoid | UGT | medium | pass | UGT__00116__sp_U3UA11_UGT7_CATRO |
| Ccarscaffold_3190134200.1 | Terpenoid | UGT | medium | pass | UGT__00016__sp_A0A193AUF6_GGT23_PUNGR |
| Ccarscaffold_3190134210.1 | Terpenoid | UGT | medium | pass | UGT__00016__sp_A0A193AUF6_GGT23_PUNGR |