PlantSME Plant secondary metabolism enzyme database

Cynara cardunculus (cynara_cardunculus)

Imported from atlas release summary for Cynara cardunculus.

1342
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.25% Phenylpropanoid pathway 21.31% Alkaloid pathway 19.67% Flavonoid pathway 12.67% Rosmarinic acid pathway 9.84% Steroid pathway 6.26%
Family Distribution
C4H 6.79% C3'H/CYP98A 6.23% BAHD 6.12% CYP76 4.33% 4CL 3.83% POD 3.81% IFS 3.61% T3O 3.53%
Other Families 61.74%
More Families (96)
UGT 119 3.28% 7DLGT 112 3.09% UFGT 110 3.03% F3'H/CYP75B 107 2.95% F3H 93 2.57% DWF4/CYP90B1 90 2.48% BR6OX2/CYP85A2 71 1.96% NMT 68 1.88% SMT1/SMT2/SMT3 63 1.74% STR 62 1.71% CODM/T6ODM 59 1.63% CYP71 52 1.43% H6H 45 1.24% LAC 45 1.24% TRI/TRII 43 1.19% G8O/G8H 41 1.13% TPS 41 1.13% F5H/CYP84A 40 1.1% CAD 39 1.08% GES 37 1.02% CYP51G1 37 1.02% CSE 36 0.99% CAS 34 0.94% PYKS 33 0.91% IO 33 0.91% CYP90D1 33 0.91% GS 32 0.88% IFR 32 0.88% TAT 28 0.77% SLS 26 0.72% HCT 26 0.72% 7DLH 25 0.69% T16H 22 0.61% FNS 22 0.61% PMT 20 0.55% SGD 20 0.55% F3'5'H/CYP75A 20 0.55% COMT 20 0.55% BBE 19 0.52% NCS 17 0.47% RAS 17 0.47% DFR 15 0.41% CPD/CYP90A1 15 0.41% CCR 14 0.39% BR6OX1/CYP85A1 14 0.39% HMGR 14 0.39% 8HGO 13 0.36% PAL 12 0.33% CNMT 11 0.3% MPO 11 0.3% CPR 11 0.3% 16OMT 10 0.28% ANS/LDOX 10 0.28% CHS 10 0.28% ANR 10 0.28% CCoAOMT 10 0.28% GGPPS 10 0.28% ROT3/CYP90C1 9 0.25% FPPS 9 0.25% DET2 8 0.22% SQS/FDFT1 8 0.22% CYP719 7 0.19% ISY 7 0.19% SQE 7 0.19% AACT 7 0.19% COR 6 0.17% TYDC_DDC 6 0.17% LAMT 6 0.17% HPPR 6 0.17% DXS 6 0.17% ADC 5 0.14% SMO1/SMO2 5 0.14% DWF7 5 0.14% 6OMT_4OMT_SOMT 4 0.11% CYP80B1 4 0.11% CHI 4 0.11% MCT/IspD 4 0.11% XMT_MXMT_DXMT 3 0.08% FLS 3 0.08% DWF1 3 0.08% CPI1 3 0.08% MVD 3 0.08% MVK 3 0.08% HMGS 2 0.06% IDI 2 0.06% PMK 2 0.06% GPPS 2 0.06% DXR 2 0.06% TDC 1 0.03% FK 1 0.03% DWF5 1 0.03% HYD1 1 0.03% MDS/IspF 1 0.03% CMK/IspE 1 0.03% HDR/IspH 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 406 20 BAHD (173) View species results
Phenylpropanoid pathway 286 11 POD (124) View species results
Alkaloid pathway 264 21 7DLGT (43) View species results
Flavonoid pathway 170 10 UFGT (104) View species results
Rosmarinic acid pathway 132 7 C4H (60) View species results
Steroid pathway 84 12 SMT1/SMT2/SMT3 (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1534 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 265 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Ccarscaffold_6310213020.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccarscaffold_7190228740.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccarscaffold_7320231140.1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Ccarscaffold_7480233060.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccarscaffold_76760236000.1 Alkaloid STR medium pass STR__00002__sp_P68175_STSY_RAUSE
Ccarscaffold_80240590.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccarscaffold_80380241760.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccarscaffold_820244180.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccarscaffold_8210244390.1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Ccarscaffold_830245380.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccarscaffold_8920253400.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ccarscaffold_9270257930.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR