PlantSME Plant secondary metabolism enzyme database

Cynara cardunculus (cynara_cardunculus)

Imported from atlas release summary for Cynara cardunculus.

1342
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 406 20 BAHD (173) View species results
Phenylpropanoid pathway 286 11 POD (124) View species results
Alkaloid pathway 264 21 7DLGT (43) View species results
Flavonoid pathway 170 10 UFGT (104) View species results
Rosmarinic acid pathway 132 7 C4H (60) View species results
Steroid pathway 84 12 SMT1/SMT2/SMT3 (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1534 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 265 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Ccarscaffold_10010003900.1 Flavonoid 4CL medium pass
Ccarscaffold_120023510.1 Flavonoid 4CL medium pass
Ccarscaffold_120023810.1 Flavonoid 4CL medium pass
Ccarscaffold_12180025580.1 Flavonoid 4CL medium pass
Ccarscaffold_12680029890.1 Flavonoid 4CL low borderline
Ccarscaffold_130032460.1 Flavonoid 4CL medium pass
Ccarscaffold_130032760.1 Flavonoid 4CL medium pass
Ccarscaffold_1310034040.1 Flavonoid 4CL low borderline
Ccarscaffold_1310034050.1 Flavonoid 4CL medium pass
Ccarscaffold_1310034060.1 Flavonoid 4CL medium pass
Ccarscaffold_13620037670.1 Flavonoid 4CL low borderline
Ccarscaffold_1410041100.1 Flavonoid 4CL low borderline
Ccarscaffold_15400050690.1 Flavonoid 4CL medium pass
Ccarscaffold_15780052860.1 Flavonoid 4CL medium pass
Ccarscaffold_170060810.1 Flavonoid 4CL low borderline
Ccarscaffold_1720062270.1 Flavonoid 4CL low borderline
Ccarscaffold_17980066840.1 Flavonoid 4CL medium pass
Ccarscaffold_180067100.1 Flavonoid 4CL low borderline
Ccarscaffold_20330082680.1 Flavonoid 4CL medium pass
Ccarscaffold_21630088690.1 Flavonoid 4CL low borderline
Ccarscaffold_21940089870.1 Flavonoid 4CL low borderline
Ccarscaffold_2520105570.1 Flavonoid 4CL medium pass
Ccarscaffold_34840144350.1 Flavonoid 4CL medium pass
Ccarscaffold_350145280.1 Flavonoid 4CL low borderline
Ccarscaffold_3740151320.1 Flavonoid 4CL medium pass
Ccarscaffold_3860154920.1 Flavonoid 4CL medium pass
Ccarscaffold_40158650.1 Flavonoid 4CL low borderline
Ccarscaffold_4430172060.1 Flavonoid 4CL medium pass
Ccarscaffold_44960173470.1 Flavonoid 4CL medium pass
Ccarscaffold_4530174640.1 Flavonoid 4CL low borderline
Ccarscaffold_46350177250.1 Flavonoid 4CL medium pass
Ccarscaffold_470178340.1 Flavonoid 4CL medium pass
Ccarscaffold_48190181490.1 Flavonoid 4CL low borderline
Ccarscaffold_4860182510.1 Flavonoid 4CL medium pass
Ccarscaffold_540194340.1 Flavonoid 4CL medium pass
Ccarscaffold_5510196760.1 Flavonoid 4CL medium pass
Ccarscaffold_5740201930.1 Flavonoid 4CL low borderline
Ccarscaffold_6530216910.1 Flavonoid 4CL medium pass
Ccarscaffold_80110241500.1 Flavonoid 4CL medium pass
Ccarscaffold_80240690.1 Flavonoid 4CL medium pass
Ccarscaffold_8270244890.1 Flavonoid 4CL low borderline
Ccarscaffold_840246660.1 Flavonoid 4CL medium pass
Ccarscaffold_870251350.1 Flavonoid 4CL medium pass
Ccarscaffold_88350252670.1 Flavonoid 4CL low borderline
Ccarscaffold_900254630.1 Flavonoid 4CL low borderline
Ccarscaffold_91440256570.1 Flavonoid 4CL medium pass
Ccarscaffold_130032660.1 Flavonoid ANR medium borderline
Ccarscaffold_16570058300.1 Flavonoid ANR medium borderline
Ccarscaffold_1780065770.1 Flavonoid ANR medium borderline
Ccarscaffold_180067360.1 Flavonoid ANR low borderline