Cynara cardunculus (cynara_cardunculus)
Imported from atlas release summary for Cynara cardunculus.
1714
Candidate Protein Records
1342
Pathway-Level Records
3625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3625
Family-Level Calls
C4H
6.79%
C3'H/CYP98A
6.23%
BAHD
6.12%
CYP76
4.33%
4CL
3.83%
POD
3.81%
IFS
3.61%
T3O
3.53%
Other Families
61.74%
More Families (96)
UGT
119
3.28%
7DLGT
112
3.09%
UFGT
110
3.03%
F3'H/CYP75B
107
2.95%
F3H
93
2.57%
DWF4/CYP90B1
90
2.48%
BR6OX2/CYP85A2
71
1.96%
NMT
68
1.88%
SMT1/SMT2/SMT3
63
1.74%
STR
62
1.71%
CODM/T6ODM
59
1.63%
CYP71
52
1.43%
H6H
45
1.24%
LAC
45
1.24%
TRI/TRII
43
1.19%
G8O/G8H
41
1.13%
TPS
41
1.13%
F5H/CYP84A
40
1.1%
CAD
39
1.08%
GES
37
1.02%
CYP51G1
37
1.02%
CSE
36
0.99%
CAS
34
0.94%
PYKS
33
0.91%
IO
33
0.91%
CYP90D1
33
0.91%
GS
32
0.88%
IFR
32
0.88%
TAT
28
0.77%
SLS
26
0.72%
HCT
26
0.72%
7DLH
25
0.69%
T16H
22
0.61%
FNS
22
0.61%
PMT
20
0.55%
SGD
20
0.55%
F3'5'H/CYP75A
20
0.55%
COMT
20
0.55%
BBE
19
0.52%
NCS
17
0.47%
RAS
17
0.47%
DFR
15
0.41%
CPD/CYP90A1
15
0.41%
CCR
14
0.39%
BR6OX1/CYP85A1
14
0.39%
HMGR
14
0.39%
8HGO
13
0.36%
PAL
12
0.33%
CNMT
11
0.3%
MPO
11
0.3%
CPR
11
0.3%
16OMT
10
0.28%
ANS/LDOX
10
0.28%
CHS
10
0.28%
ANR
10
0.28%
CCoAOMT
10
0.28%
GGPPS
10
0.28%
ROT3/CYP90C1
9
0.25%
FPPS
9
0.25%
DET2
8
0.22%
SQS/FDFT1
8
0.22%
CYP719
7
0.19%
ISY
7
0.19%
SQE
7
0.19%
AACT
7
0.19%
COR
6
0.17%
TYDC_DDC
6
0.17%
LAMT
6
0.17%
HPPR
6
0.17%
DXS
6
0.17%
ADC
5
0.14%
SMO1/SMO2
5
0.14%
DWF7
5
0.14%
6OMT_4OMT_SOMT
4
0.11%
CYP80B1
4
0.11%
CHI
4
0.11%
MCT/IspD
4
0.11%
XMT_MXMT_DXMT
3
0.08%
FLS
3
0.08%
DWF1
3
0.08%
CPI1
3
0.08%
MVD
3
0.08%
MVK
3
0.08%
HMGS
2
0.06%
IDI
2
0.06%
PMK
2
0.06%
GPPS
2
0.06%
DXR
2
0.06%
TDC
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
HYD1
1
0.03%
MDS/IspF
1
0.03%
CMK/IspE
1
0.03%
HDR/IspH
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 406 | 20 | BAHD (173) | View species results |
| Phenylpropanoid pathway | 286 | 11 | POD (124) | View species results |
| Alkaloid pathway | 264 | 21 | 7DLGT (43) | View species results |
| Flavonoid pathway | 170 | 10 | UFGT (104) | View species results |
| Rosmarinic acid pathway | 132 | 7 | C4H (60) | View species results |
| Steroid pathway | 84 | 12 | SMT1/SMT2/SMT3 (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1534 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 265 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccarscaffold_1570052450.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_1580053010.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_1800067460.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_200080950.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_200080970.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_20100081750.1 | Alkaloid | SLS | medium | pass | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_20100081760.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_22560093350.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Ccarscaffold_2710114830.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_27500116090.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_28310119540.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_28310119550.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_310131070.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_3220135950.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Ccarscaffold_41190163450.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_510188100.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_68340222550.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_8740251580.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_8740251590.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_8740251600.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_9730263060.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Ccarscaffold_100003240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_10940012650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_1120016370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_11610020110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_12410028100.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccarscaffold_1270030180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_13410036230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_1350036700.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_14860046480.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_150047770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_15690052090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_16000055520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_1790066390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_1880071920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_1900073810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_190073240.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccarscaffold_1990078790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_200080370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_210085580.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_21010086010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_22870094950.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccarscaffold_240099920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_24500102250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_24500102260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_2550106960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_2560107310.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Ccarscaffold_2650111190.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_2810118950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Ccarscaffold_28280119310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |