PlantSME Plant secondary metabolism enzyme database

Echinochloa oryzicola (echinochloa_oryzicola)

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Imported from atlas release summary for Echinochloa oryzicola.

2857
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.73% Phenylpropanoid pathway 24.36% Alkaloid pathway 21.91% Flavonoid pathway 11.41% Rosmarinic acid pathway 10.89% Steroid pathway 5.71%
Family Distribution
C4H 6.99% C3'H/CYP98A 6.75% BAHD 6.12% POD 4.55% T3O 4.04% CYP76 3.82% IFS 3.78% 4CL 3.65%
Other Families 60.3%
More Families (98)
F3'H/CYP75B 229 2.81% DWF4/CYP90B1 216 2.65% BR6OX2/CYP85A2 206 2.53% UGT 192 2.36% CYP71 182 2.24% F3H 177 2.17% 7DLGT 169 2.08% UFGT 166 2.04% NMT 140 1.72% SMT1/SMT2/SMT3 129 1.58% STR 120 1.47% H6H 91 1.12% CODM/T6ODM 87 1.07% SLS 86 1.06% LAC 86 1.06% PYKS 85 1.04% CAD 85 1.04% HCT 85 1.04% COMT 84 1.03% G8O/G8H 83 1.02% TRI/TRII 83 1.02% RAS 82 1.01% CCR 81 1.0% T16H 79 0.97% PMT 75 0.92% CSE 74 0.91% CAS 73 0.9% TPS 73 0.9% IFR 71 0.87% 16OMT 70 0.86% NCS 69 0.85% SGD 67 0.82% GES 64 0.79% CYP90D1 64 0.79% FNS 63 0.77% F5H/CYP84A 62 0.76% ANR 61 0.75% GS 52 0.64% CHS 51 0.63% PAL 51 0.63% F3'5'H/CYP75A 50 0.61% CYP51G1 50 0.61% CPD/CYP90A1 47 0.58% COR 46 0.57% DFR 42 0.52% 7DLH 31 0.38% IO 31 0.38% TYDC_DDC 28 0.34% BBE 28 0.34% BR6OX1/CYP85A1 28 0.34% CNMT 27 0.33% CYP80B1 23 0.28% 8HGO 23 0.28% FPPS 22 0.27% CYP719 18 0.22% ANS/LDOX 17 0.21% TAT 17 0.21% MVK 16 0.2% GGPPS 16 0.2% CPR 15 0.18% MPO 14 0.17% LAMT 14 0.17% ROT3/CYP90C1 14 0.17% ISY 13 0.16% XMT_MXMT_DXMT 12 0.15% TDC 12 0.15% CCoAOMT 12 0.15% SMO1/SMO2 12 0.15% HPPR 11 0.14% CHI 10 0.12% SQS/FDFT1 10 0.12% AACT 10 0.12% MVD 10 0.12% DET2 9 0.11% HMGR 9 0.11% MCT/IspD 8 0.1% CYP80F1 7 0.09% DWF1 7 0.09% IDI 7 0.09% ODC 6 0.07% HYD1 6 0.07% DXS 6 0.07% ADC 5 0.06% FLS 5 0.06% HDR/IspH 5 0.06% 6OMT_4OMT_SOMT 4 0.05% FK 4 0.05% HMGS 4 0.05% MDS/IspF 4 0.05% SQE 3 0.04% PMK 3 0.04% CMK/IspE 3 0.04% DWF7 2 0.02% CPI1 2 0.02% DWF5 2 0.02% DXR 2 0.02% HDS/IspG 2 0.02% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 735 19 BAHD (329) View species results
Phenylpropanoid pathway 696 12 POD (326) View species results
Alkaloid pathway 626 23 7DLGT (78) View species results
Flavonoid pathway 326 14 UFGT (144) View species results
Rosmarinic acid pathway 311 7 C4H (166) View species results
Steroid pathway 163 13 SMT1/SMT2/SMT3 (71) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3572 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 665 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HDS/IspG
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Gene Pathway Family Confidence Status Best Target
echinochloa_oryzicola_GWHPBDNS026514 Terpenoid HDS/IspG high pass HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH
echinochloa_oryzicola_GWHPBDNS059546 Terpenoid HDS/IspG high pass HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH